release v0.6.3

Also fix CLI version to import dynamically instead of hardcoding.

Author: katosh

CHANGELOG.md

@@ -2,7 +2,7 @@
 
 All notable changes to this project will be documented in this file.
 
-## [Unreleased]
+## [0.6.3]
 
  - fix condition extraction across all plotting functions: condition names are now extracted from `run_info` params (authoritative source) instead of fragile `_extract_conditions_from_key()` string-splitting, which was broken for multi-word condition names (e.g. "Pre-treatment", "Wild Type"). Affected functions: `plot_gene_expression`, `volcano_da`, `volcano_de`, `multi_volcano_da`, `direction_barplot`
  - silent fallback to pattern-matched layers/keys from potentially wrong runs has been replaced with explicit warnings in `plot_gene_expression` and `volcano_de` (FDR/PTP key inference)

kompot/cli/main.py

@@ -7,6 +7,7 @@
 # AFTER setting thread limit environment variables
 
 from .utils import setup_logging
+from ..version import __version__
 
 
 def _set_early_thread_limits(args_list):
@@ -67,7 +68,7 @@ def main():
     parser.add_argument(
         '--version',
         action='version',
-        version='%(prog)s 0.6.0'
+        version=f'%(prog)s {__version__}'
     )
 
     parser.add_argument(

kompot/version.py

@@ -1,3 +1,3 @@
 """Version information."""
 
-__version__ = "0.6.2"
+__version__ = "0.6.3"

pyproject.toml

@@ -37,7 +37,7 @@ ignore = ["E203", "W503"]
 
 [project]
 name = "kompot"
-version = "0.6.2"
+version = "0.6.3"
 description = "Differential abundance and gene expression analysis using Mahalanobis distance with JAX backend"
 readme = "README.md"
 authors = [