-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathprospective_representations_v1_and_v2.ttl
More file actions
3285 lines (2903 loc) · 143 KB
/
Copy pathprospective_representations_v1_and_v2.ttl
File metadata and controls
3285 lines (2903 loc) · 143 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
@prefix dct: <http://purl.org/dc/terms/> .
@prefix ep-plan: <https://w3id.org/ep-plan#> .
@prefix exact2: <http://www.owl-ontologies.com/Ontology1184060740.owl#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix prosp_plan: <http://www.example.org/prospective_plan/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
obo:BFO_0000008 rdfs:subClassOf exact2:OWLClass_8029e3a4_312f_4130_827e_d330da199ea9 .
obo:BFO_0000050 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a ;
owl:inverseOf obo:BFO_0000051 .
obo:BFO_0000056 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a ;
owl:inverseOf obo:BFO_0000057 .
obo:BFO_0000082 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a .
obo:BFO_0000083 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a .
obo:OBI_0000293 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a ;
owl:inverseOf obo:OBI_0000295 .
obo:OBI_0000299 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a ;
owl:inverseOf obo:OBI_0000312 .
obo:OBI_0000417 rdfs:subPropertyOf exact2:OWLObjectProperty_9bb6095b_b750_4987_ac0c_e5707925fa6a ;
owl:inverseOf obo:OBI_0000833 .
obo:OBI_0000426 rdfs:subClassOf exact2:Class_89 .
obo:OBI_0302905 rdfs:subClassOf exact2:Class_89 .
prosp_plan:step_12 a exact2:Class_19,
ep-plan:Step ;
rdfs:label "directly suction fluid"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_15 ;
ep-plan:hasInputVariable prosp_plan:var_15 ;
ep-plan:isElementOfPlan prosp_plan:plan_9 ;
ep-plan:isPrecededBy prosp_plan:step_10 ;
ep-plan:isStepOfPlan prosp_plan:plan_9 .
prosp_plan:step_13 a exact2:Class_19,
ep-plan:Step ;
rdfs:label "directly suction fluid"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_17,
prosp_plan:var_18,
prosp_plan:var_19 ;
ep-plan:hasInputVariable prosp_plan:var_17,
prosp_plan:var_18,
prosp_plan:var_19 ;
ep-plan:isElementOfPlan prosp_plan:plan_10 ;
ep-plan:isPrecededBy prosp_plan:step_11 ;
ep-plan:isStepOfPlan prosp_plan:plan_10 .
prosp_plan:step_18 a exact2:Store,
ep-plan:Step ;
rdfs:label "Electrodes are stored in a (with 4 ml [Washing solution] PBS without Ca/Mg) for 20 min at 37°C and 5% CO2"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_4 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_28 ;
exact2:objectProperty_3 [ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
[ a exact2:Class_83 ],
prosp_plan:var_27,
prosp_plan:var_29 ;
ep-plan:hasInputVariable prosp_plan:var_27,
prosp_plan:var_28,
prosp_plan:var_29,
prosp_plan:var_30,
prosp_plan:var_4 ;
ep-plan:isElementOfPlan prosp_plan:plan_11 ;
ep-plan:isStepOfPlan prosp_plan:plan_11 .
prosp_plan:step_19 a exact2:OWLClass_0c157e1a_5e12_448e_a95e_57cef7e77031,
ep-plan:Step ;
rdfs:label "Start stimulation device with resistance [x Ω]"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
prosp_plan:var_31,
prosp_plan:var_32 ;
ep-plan:hasInputVariable prosp_plan:var_31 ;
ep-plan:hasOutputVariable prosp_plan:var_32 ;
ep-plan:isElementOfPlan prosp_plan:plan_11 ;
ep-plan:isStepOfPlan prosp_plan:plan_11 .
prosp_plan:step_2 a exact2:Class_50,
ep-plan:Step ;
rdfs:label "warm up to 37°C:"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_2,
prosp_plan:var_3,
prosp_plan:var_4 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_5 ;
exact2:objectProperty_3 [ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
[ a exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ] ;
ep-plan:hasInputVariable prosp_plan:var_2,
prosp_plan:var_3,
prosp_plan:var_4,
prosp_plan:var_5 ;
ep-plan:isElementOfPlan prosp_plan:plan_4 ;
ep-plan:isPrecededBy prosp_plan:step_1 ;
ep-plan:isStepOfPlan prosp_plan:plan_4 .
prosp_plan:step_28 a exact2:Class_9,
ep-plan:Step ;
rdfs:label "into cup of [Device] CASY cell counter with buffer"^^xsd:string ;
obo:BFO_0000057 [ a exact2:Class_66 ],
[ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_40,
prosp_plan:var_42 ;
exact2:objectProperty_3 [ a exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ] ;
ep-plan:hasInputVariable prosp_plan:var_40,
prosp_plan:var_42 ;
ep-plan:hasOutputVariable prosp_plan:var_43 ;
ep-plan:isElementOfPlan prosp_plan:plan_12 ;
ep-plan:isPrecededBy prosp_plan:step_27 ;
ep-plan:isStepOfPlan prosp_plan:plan_12 .
prosp_plan:step_30 a exact2:Class_60,
ep-plan:Step ;
rdfs:label "calculate 1,000,000 cells per ml for approach"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_9d50649c_a0e5_4876_834d_dd48fe9095d1 ] ;
ep-plan:hasInputVariable prosp_plan:var_45 ;
ep-plan:hasOutputVariable prosp_plan:var_46 ;
ep-plan:isElementOfPlan prosp_plan:plan_13 ;
ep-plan:isPrecededBy prosp_plan:step_29 ;
ep-plan:isStepOfPlan prosp_plan:plan_13 .
prosp_plan:step_36 a exact2:Class_49,
ep-plan:Step ;
rdfs:label "incubate at 37°C"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_59 ;
exact2:objectProperty_3 [ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
[ a exact2:Class_83 ],
[ a exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ] ;
ep-plan:hasInputVariable prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55,
prosp_plan:var_59 ;
ep-plan:isElementOfPlan prosp_plan:plan_14 ;
ep-plan:isPrecededBy prosp_plan:step_35 ;
ep-plan:isStepOfPlan prosp_plan:plan_14 .
prosp_plan:step_39 a exact2:OWLClass_9ad55d12_d7ed_46a0_822a_37c797fbcdcf,
ep-plan:Step ;
rdfs:label "place Mobini Chamber electrodes on plate"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_26,
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
ep-plan:hasInputVariable prosp_plan:var_26,
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
ep-plan:isElementOfPlan prosp_plan:plan_15,
prosp_plan:plan_16 ;
ep-plan:isPrecededBy prosp_plan:step_37,
prosp_plan:step_38 ;
ep-plan:isStepOfPlan prosp_plan:plan_15,
prosp_plan:plan_16 .
prosp_plan:step_4 a exact2:Class_50,
ep-plan:Step ;
rdfs:label "warm up to 37°C:"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_7,
prosp_plan:var_8,
prosp_plan:var_9 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_5 ;
exact2:objectProperty_3 [ a exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ],
[ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ] ;
ep-plan:hasInputVariable prosp_plan:var_5,
prosp_plan:var_7,
prosp_plan:var_8,
prosp_plan:var_9 ;
ep-plan:isElementOfPlan prosp_plan:plan_5 ;
ep-plan:isPrecededBy prosp_plan:step_3 ;
ep-plan:isStepOfPlan prosp_plan:plan_5 .
prosp_plan:step_44 a exact2:Class_19,
ep-plan:Step ;
rdfs:label "directly suction fluid"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
ep-plan:hasInputVariable prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
ep-plan:isElementOfPlan prosp_plan:plan_17 ;
ep-plan:isPrecededBy prosp_plan:step_43 ;
ep-plan:isStepOfPlan prosp_plan:plan_17 .
prosp_plan:step_47 a exact2:Class_21,
ep-plan:Step ;
rdfs:label "and swing!!!"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
prosp_plan:var_70 ;
exact2:objectProperty_3 [ a exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
[ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ] ;
ep-plan:hasInputVariable prosp_plan:var_70 ;
ep-plan:isElementOfPlan prosp_plan:plan_18 ;
ep-plan:isPrecededBy prosp_plan:step_46 ;
ep-plan:isStepOfPlan prosp_plan:plan_18 .
prosp_plan:step_49 a exact2:Class_49,
ep-plan:Step ;
rdfs:label "incubate 30min in at 37°C"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_73 ;
exact2:objectProperty_3 [ a exact2:Class_83 ],
[ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
[ a exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ],
prosp_plan:var_72 ;
ep-plan:hasInputVariable prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55,
prosp_plan:var_72,
prosp_plan:var_73 ;
ep-plan:isElementOfPlan prosp_plan:plan_19 ;
ep-plan:isPrecededBy prosp_plan:step_48 ;
ep-plan:isStepOfPlan prosp_plan:plan_19 .
prosp_plan:step_51 a exact2:Class_9,
ep-plan:Step ;
rdfs:label "add 2ml isotonic HEPES buffered saline"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a exact2:Class_66 ],
prosp_plan:var_2,
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55 ;
exact2:objectProperty_3 [ a exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ] ;
ep-plan:hasInputVariable prosp_plan:var_2,
prosp_plan:var_50,
prosp_plan:var_51,
prosp_plan:var_52,
prosp_plan:var_53,
prosp_plan:var_54,
prosp_plan:var_55,
prosp_plan:var_74 ;
ep-plan:isElementOfPlan prosp_plan:plan_20 ;
ep-plan:isPrecededBy prosp_plan:step_50 ;
ep-plan:isStepOfPlan prosp_plan:plan_20 .
prosp_plan:step_52 a exact2:Measure,
ep-plan:Step ;
rdfs:label "analyse stimulated cells with Confocal Laser scanning microcope and analysis software "^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a exact2:Class_66 ],
prosp_plan:var_50,
prosp_plan:var_75,
prosp_plan:var_80 ;
obo:BFO_0000086 [ a obo:PATO_0000001 ],
prosp_plan:var_76,
prosp_plan:var_77 ;
ep-plan:hasInputVariable prosp_plan:var_50,
prosp_plan:var_75,
prosp_plan:var_76,
prosp_plan:var_77,
prosp_plan:var_80 ;
ep-plan:hasOutputVariable prosp_plan:var_78,
prosp_plan:var_79 ;
ep-plan:isElementOfPlan prosp_plan:plan_15 ;
ep-plan:isPrecededBy prosp_plan:mstep_17 ;
ep-plan:isStepOfPlan prosp_plan:plan_15 .
prosp_plan:step_53 a exact2:Measure,
ep-plan:Step ;
rdfs:label "analyse non-stimulated cells with Confocal Laser scanning microcope and analysis software "^^xsd:string ;
obo:BFO_0000057 [ a exact2:Class_66 ],
[ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_53,
prosp_plan:var_75,
prosp_plan:var_80 ;
obo:BFO_0000086 [ a obo:PATO_0000001 ],
prosp_plan:var_76,
prosp_plan:var_77 ;
ep-plan:hasInputVariable prosp_plan:var_53,
prosp_plan:var_75,
prosp_plan:var_76,
prosp_plan:var_77,
prosp_plan:var_80 ;
ep-plan:hasOutputVariable prosp_plan:var_81,
prosp_plan:var_82 ;
ep-plan:isElementOfPlan prosp_plan:plan_15 ;
ep-plan:isPrecededBy prosp_plan:mstep_17 ;
ep-plan:isStepOfPlan prosp_plan:plan_15 .
prosp_plan:step_6 a exact2:Class_50,
ep-plan:Step ;
rdfs:label "warm up to room temperature:"^^xsd:string ;
obo:BFO_0000057 [ a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
prosp_plan:var_11,
prosp_plan:var_12 ;
obo:BFO_0000086 [ a obo:PATO_0000146 ],
prosp_plan:var_13 ;
exact2:objectProperty_3 [ a exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ],
[ a exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ] ;
ep-plan:hasInputVariable prosp_plan:var_11,
prosp_plan:var_12,
prosp_plan:var_13 ;
ep-plan:isElementOfPlan prosp_plan:plan_6 ;
ep-plan:isPrecededBy prosp_plan:step_5 ;
ep-plan:isStepOfPlan prosp_plan:plan_6 .
prosp_plan:var_14 a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1,
ep-plan:Variable ;
rdfs:label "[Cell line] MG-63"^^xsd:string .
prosp_plan:var_16 a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1,
ep-plan:Variable ;
rdfs:label "waste culture medium"^^xsd:string .
prosp_plan:var_25 a exact2:Class_66,
ep-plan:Variable ;
rdfs:label "[Device] Mobini chamber Electrodes"^^xsd:string .
prosp_plan:var_34 a obo:PATO_0000918,
ep-plan:Variable ;
rdfs:label "1.5ml"^^xsd:string .
prosp_plan:var_57 a exact2:Class_66,
ep-plan:Variable ;
rdfs:label "desinfected [Cultivation container] 6 well glass bottom plate"^^xsd:string .
prosp_plan:var_6 a exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1,
ep-plan:Variable ;
rdfs:label "[Washing solution] PBS without Ca/Mg after heating"^^xsd:string .
exact2:Adjust a owl:Class ;
rdfs:label "adjust" ;
exact2:Synonym "\"Bring volume\"" ;
exact2:is_definition """is an experimental action to make exact; to bring an entity to a specified standard
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/Adjust
""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000356 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
exact2:Class_89 .
exact2:Air_Dry a owl:Class ;
rdfs:label "air dry" ;
exact2:Synonym "\"Dry\"",
"dry" ;
exact2:is_definition """is an experimental action or "process of drying by means of air"
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Align a owl:Class ;
rdfs:label "align" ;
exact2:Synonym "\"Orient\"" ;
exact2:is_definition """is an experimental action "to place or become placed in a line; to bring components into proper or desirable coordination or relation"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Aliquot a owl:Class ;
rdfs:label "aliquot" ;
exact2:is_definition """is an experimental action "to measure out (a substance) into small samples of equal size; to divide into aliquot parts, esp. for use as experimental samples"
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
exact2:Class_89 .
exact2:Allow a owl:Class ;
rdfs:label "allow" ;
exact2:is_definition """is an experimental action "to permit (to do something); let; to set aside"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.
""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:Class_83 ],
exact2:Class_89 .
exact2:Atomic a owl:NamedIndividual .
exact2:Autoclave a owl:Class ;
rdfs:label "autoclave" ;
exact2:is_definition """is an experimental action "to heat or sterilize (a substance or object) in an autoclave"
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Check a owl:Class ;
rdfs:label "check" ;
exact2:is_definition "is an experimental action to verify the subject or entity at hand " ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Chill a owl:Class ;
rdfs:label "chill" ;
exact2:is_definition "is an experimental action to place the entity in a low temperature environment " ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:Class_83 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
exact2:Class_89 .
exact2:Class_11 a owl:Class ;
rdfs:label "pour"^^xsd:string ;
exact2:Synonym """"Pour off"
"Continue to pour\"""" ;
exact2:is_definition """is an experimental action “to cause or allow (a substance, esp. a liquid) to flow out of a vessel or receptacle; to emit in a stream”
Reference: THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
exact2:Class_89 .
exact2:Class_110 a owl:Class ;
rdfs:label "author identification"^^xsd:string ;
rdfs:comment "IAO: http://purl.obolibrary.org/obo/IAO_0000302",
"""is syninym to DC: author of the protocol
A textual entity intended to identify a particular author""" ;
rdfs:subClassOf obo:IAO_0000300 .
exact2:Class_118 a owl:Class ;
rdfs:label "start location"^^xsd:string ;
rdfs:comment "start location is a location of a biochemical entity or equipment at the beginning of an experiment action"^^xsd:string ;
rdfs:subClassOf obo:BFO_0000029 .
exact2:Class_119 a owl:Class ;
rdfs:label "end location"^^xsd:string ;
rdfs:comment "end location is a location of a biochemical entity or equipment at the end of an experiment action"^^xsd:string ;
rdfs:subClassOf obo:BFO_0000029 .
exact2:Class_123 a owl:Class ;
rdfs:label "warning"^^xsd:string ;
rdfs:comment "an alert message given to a user of a protocol that a certain action can cause unexpected results and errors."^^xsd:string ;
rdfs:subClassOf exact2:Class_121 .
exact2:Class_127 a owl:Class ;
rdfs:label "subject"^^xsd:string ;
rdfs:comment """The topic of the resource.
http://purl.org/dc/terms/subject
""" ;
rdfs:subClassOf obo:IAO_0000030 .
exact2:Class_128 a owl:Class ;
rdfs:label "date submitted"^^xsd:string ;
rdfs:comment """Date of submission of the resource.
http://purl.org/dc/terms/dateSubmitted""" ;
rdfs:subClassOf obo:IAO_0000030 .
exact2:Class_13 a owl:Class ;
rdfs:label "wait"^^xsd:string ;
exact2:is_definition "is an experimental action to allow a time interval to pass without experiment actions"^^xsd:string ;
rdfs:subClassOf exact2:Class_89 .
exact2:Class_20 a owl:Class ;
rdfs:label "shake"^^xsd:string ;
exact2:is_definition """is an experimental action to move regularly by agitating; to throw off by a jolting or vibrating motion in the defined restricted space
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/shake"""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000146 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
exact2:Class_89 .
exact2:Class_23 a owl:Class ;
rdfs:label "calibrate"^^xsd:string ;
exact2:Synonym """ http://purl.obolibrary.org/obo/OBI_0000818 calibration
A planned process with the objective to establish the relationship between data produced by a measurement device and physical qualities. This is done by using the measurement device under defined conditions, and either tuning it to adjust the measured output, or record the output and use it as a reference in future measurements.""" ;
rdfs:comment """To calibrate is an experiment action “to determine the correct position, value, capacity, etc., of; to set an instrument so that readings taken from it are absolute rather than relative”
Reference: THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
exact2:Class_89 .
exact2:Class_25 a owl:Class ;
rdfs:label "filter"^^xsd:string ;
exact2:is_definition """is an experimental action “to pass (a liquid) through a filter, or some porous medium, for the purpose of removing solid particles or impurities”
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom exact2:OWLClass_b8241e01_b952_4810_bf2d_43ec10dd9db6 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
exact2:Class_89 .
exact2:Class_27 a owl:Class ;
rdfs:label "discard"^^xsd:string ;
exact2:is_definition """is an experimental action to move an unwanted entity to an appropriate waste location
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_28 a owl:Class ;
rdfs:label "connect"^^xsd:string ;
exact2:is_definition """is an experimental action “to join, fasten, or link together … by the connecting medium or instrumentality”
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom obo:BFO_0000040 ],
exact2:Class_89 .
exact2:Class_29 a owl:Class ;
rdfs:label "vortex"^^xsd:string ;
exact2:is_definition """is an experimental action of a spiral rotatory movement of matter with the increasing gravity round a centre or axis
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
exact2:Class_89 .
exact2:Class_30 a owl:Class ;
rdfs:label "rotate"^^xsd:string ;
exact2:is_definition """is an experimental action “to cause (an entity) to turn round or revolve on a centre or axis”
Reference: THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_31 a owl:Class ;
rdfs:label "inoculate"^^xsd:string ;
exact2:Synonym "\"Seed\"" ;
exact2:is_definition """is an experiment action to "introduce a microorganism or suspension of microorganisms (e.g. bacteria) into a culture medium"
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/Inoculate"""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_32 a owl:Class ;
rdfs:label "cover"^^xsd:string ;
exact2:is_definition """ is an experimental action to put or lay a top over a base, with the effect of enclosing
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
exact2:Class_89 .
exact2:Class_33 a owl:Class ;
rdfs:label "seal"^^xsd:string ;
exact2:is_definition """is an experimental action to close or fasten tightly a base and a top by any substance or devise used as sealant
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
exact2:Class_89 .
exact2:Class_34 a owl:Class ;
rdfs:label "join"^^xsd:string ;
exact2:is_definition """is an experimental action “to put (things) together, so that they become physically united or continuous; to fasten, attach, connect, unite (one thing to another); also, to connect by means of something intervening or attached to each”
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_37 a owl:Class ;
rdfs:label "ignite"^^xsd:string ;
exact2:is_definition """is an experimental action “to subject to the action of fire”
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
exact2:Class_89 .
exact2:Class_38 a owl:Class ;
rdfs:label "thaw"^^xsd:string ;
exact2:is_definition """is an experimental action to change a substance from a frozen state to a liquid state
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000146 ],
[ a owl:Restriction ;
owl:onProperty exact2:OWLObjectProperty_be19e6ab_5d59_4e00_8a0b_66e0e2fbd057 ;
owl:someValuesFrom obo:PATO_0000819 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
exact2:Class_89 .
exact2:Class_44 a owl:Class ;
rdfs:label "dissolve"^^xsd:string ;
exact2:is_definition """is an experimental action “to change or cause to change from a solid to a dispersed form by immersion in a fluid of suitable properties”
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/Dissolve"""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
exact2:Class_89 .
exact2:Class_47 a owl:Class ;
rdfs:label "break"^^xsd:string ;
exact2:is_definition """is an experimental action “to separate into two or more pieces” regardless of precision of the separation
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_48 a owl:Class ;
rdfs:label "pierce"^^xsd:string ;
exact2:is_definition """is an experimental action to penetrate; to pass or break through or into something, esp. as or in the manner of a sharp-pointed object
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_51 a owl:Class ;
rdfs:label "boil"^^xsd:string ;
exact2:is_definition """is an experimental action “to bubble up in agitation through the action of heat causing the lowest portions of the liquid to pass into the gaseous form and escape; to reach the boiling point, to turn from the liquid into the gaseous state”
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_52 a owl:Class ;
rdfs:label "streak"^^xsd:string ;
exact2:is_definition "is an experimental action to dilute a microbial sample using a sterile tool to isolate individual colonies. The sterile tool is dragged across the surface of solid culture medium in a zig zag motion until 30% of the solid medium is covered, this action is then repeated twice more in different sectors being cautious not to touch the previously streaked sectorsof the solid culture medium. "^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
exact2:Class_89 .
exact2:Class_54 a owl:Class ;
rdfs:label "wash"^^xsd:string ;
exact2:Synonym "\"Rinse\"",
"""washing
http://purl.obolibrary.org/obo/OBI_0302888
washing is a process by which a material entity acting as contaminant (e.g. excess staining reagent) is removed by application of one or more cycles of solution in flow.
""" ;
exact2:is_definition """is an experimental action “to cleanse, remove "the unwanted material” from an entity by affusion of or immersion in” fluid
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_786b6d18_eabf_4ad4_8f61_8aa83f686be8 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
exact2:Class_89 .
exact2:Class_56 a owl:Class ;
rdfs:label "record"^^xsd:string ;
rdfs:comment "To record is an experiment action to represent symbolically a value of a measurement or an observation in order to preserve information for later use"^^xsd:string ;
rdfs:subClassOf exact2:Class_89 .
exact2:Class_59 a owl:Class ;
rdfs:label "measure"^^xsd:string ;
rdfs:comment """To measure is an experiment action “to determine the extent, quantity, amount or degree of something”
Reference: Based on Collins Softback English Dictionary, HarperCollins Publishers, Glasgow, 1993."""^^xsd:string ;
rdfs:subClassOf exact2:Class_89 .
exact2:Class_64 a owl:Class ;
rdfs:label "preparation procedure"^^xsd:string ;
rdfs:comment "a procedure with a goal of preparation for the execution of a main part of an experimental protocol."^^xsd:string ;
rdfs:subClassOf exact2:Class_63 .
exact2:Class_65 a owl:Class ;
rdfs:label "operating procedure"^^xsd:string ;
rdfs:comment " a sequence of experiment actions with specified goals."^^xsd:string ;
rdfs:subClassOf exact2:Class_63 .
exact2:Class_7 a owl:Class ;
rdfs:label "divide"^^xsd:string ;
exact2:Synonym "\"Split\"" ;
exact2:is_definition """is an experimental action “to separate (a thing) into parts, or (a number or collective body) into smaller groups; to split up, cleave; to break or cut asunder”
Reference:based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED."""^^xsd:string ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Class_72_76 a owl:NamedIndividual .
exact2:Class_77 a owl:Class ;
rdfs:label "critical step"^^xsd:string ;
rdfs:comment "refrence: Nature Protocols"^^xsd:string ;
rdfs:subClassOf exact2:Class_121 .
exact2:Class_78 a owl:Class ;
rdfs:label "neurotoxic"^^xsd:string ;
rdfs:comment """avoid contact with skin, eyes or mucous membranes; keep away from sources of ignition. When handling , wear gloves.
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Class_79 a owl:Class ;
rdfs:label "highly flammable"^^xsd:string ;
rdfs:comment """avoid contact with skin, eyes or mucous membranes; keep away from sources of ignition.
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Class_80 a owl:Class ;
rdfs:label "flammable"^^xsd:string ;
rdfs:comment """keep away from sources of ignition.
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Class_81 a owl:Class ;
rdfs:label "toxic"^^xsd:string ;
rdfs:comment """avoid inhalation, ingestion or contact with skin, eyes or mucous membranes
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Class_82 a owl:Class ;
rdfs:label "pyrophoric"^^xsd:string ;
rdfs:comment """Ignates in air.
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Class_86_101 a owl:NamedIndividual .
exact2:Class_8_34 a owl:NamedIndividual .
exact2:Class_99 a owl:Class ;
rdfs:label "volatile"^^xsd:string ;
rdfs:comment """handle in well-ventilated charcoal-filtered hood
Reference: Nature Protocols"""^^xsd:string ;
rdfs:subClassOf exact2:Class_122 .
exact2:Clean a owl:Class ;
rdfs:label "clean" ;
exact2:is_definition """is an experimental action "to remove dirt or other impurities; recently washed;without extraneous or foreign materials"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
exact2:Class_89 .
exact2:Coat a owl:Class ;
rdfs:label "coat" ;
exact2:is_definition """is an experimental action to add a layer of a chemical agent or biological entity that covers or conceals a surface
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.""" ;
rdfs:subClassOf exact2:Class_89 .
exact2:Cool a owl:Class ;
rdfs:label "cool" ;
exact2:is_definition "is an experimental action where an entity is placed in a lower temperature environment than the current experimental temperature." ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000146 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:Class_83 ],
exact2:Class_89 .
exact2:Cut a owl:Class ;
rdfs:label "cut" ;
exact2:is_definition """is an experimental action "to divide or be divided with or as if with a sharp instrument"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Dilute a owl:Class ;
rdfs:label "dilute" ;
exact2:is_definition """is an experimental action "to make or become less concentrated, esp by adding water or a thinner; (of a solution, suspension, mixture, etc) having a low concentration or a concentration that has been reduced by admixture"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.
""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000918 ],
exact2:Class_89 .
exact2:Disconnect a owl:Class ;
rdfs:label "disconnect" ;
exact2:is_definition """is an experimental action to break the connection between two or more entities
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.
""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:EXACT_DatatypeProperty_101 a owl:DatatypeProperty .
exact2:Encircle a owl:Class ;
rdfs:label "encircle" ;
exact2:is_definition """is an experimental action "to form a circle around; enclose within a circle; surround"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.
""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Fixate a owl:Class ;
rdfs:label "fixate" ;
exact2:is_definition """is an experimental action to use a fixative to preserve histological or cytological specimens
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/Fixation""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
[ a owl:Restriction ;
owl:onProperty obo:BFO_0000086 ;
owl:someValuesFrom obo:PATO_0000356 ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_aa788dcd_414c_4fdc_8714_55549190d2b7 ],
exact2:Class_89 .
exact2:Freeze a owl:Class ;
rdfs:label "freeze" ;
exact2:is_definition """is an experimental action "to change (a liquid) into a solid as a result of a reduction in temperature, or (of a liquid) to solidify in this way, esp to convert or be converted into ice"
Reference: based on COLLINS SOFTBACK ENGLISH DICTIONARY, HarperCollins Publishers, Glasgow, 1993.""" ;
rdfs:subClassOf exact2:Class_89 .
exact2:Insert a owl:Class ;
rdfs:label "insert" ;
exact2:Synonym "\"Introduce\"" ;
exact2:is_definition """is an experimental action "to set, put, or place in; to push or thrust in; to fix or fix in; to introduce; to ingraft. Said primarily of putting any solid object into a space which it fits, or fills up; hence to place a thing, as an addition, between the parts of another"
Reference: based on THE OXFORD ENGLISH DICTIONARY (1989) OXFORD UNIVERSITY PRESS, 2 ED.""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_73dc6c0b_f3ca_475a_9cb1_03dcc16f75b1 ],
exact2:Class_89 .
exact2:Invert a owl:Class ;
rdfs:label "invert" ;
exact2:is_definition """is an experimental action "to turn over; to put upside down" an entity
Reference:based on BIOLOGY ONLINE DICTIONARY http://www.biology-online.org/dictionary/Invert""" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:OWLClass_92c1d888_e0d3_4845_829b_1e952e8f1b1b ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_a12b7240_d9d1_4b4c_9074_8f74523d905f ],
[ a owl:Restriction ;
owl:onProperty exact2:objectProperty_3 ;
owl:someValuesFrom exact2:OWLClass_b62a4dfe_b059_4348_a942_31b8f275e857 ],
exact2:Class_89 .
exact2:Label a owl:Class ;
rdfs:label "label" ;
exact2:Synonym "\"Mark\"" ;
exact2:is_definition "is an experimental action to mark an entity with a unique identifier or description" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty obo:BFO_0000057 ;
owl:someValuesFrom exact2:Class_66 ],
[ a owl:Restriction ;
owl:onProperty exact2:OWLObjectProperty_be19e6ab_5d59_4e00_8a0b_66e0e2fbd057 ;
owl:someValuesFrom obo:PATO_0000819 ],
exact2:Class_89 .
exact2:Leave a owl:Class ;
rdfs:label "leave" ;
exact2:Synonym """"leave behind"
""" ;
exact2:is_definition " is an experimental action to let an entity remain unremoved or undone" ;