SeqKit v0.4.0

_64-bit versions are highly recommended._

Changelog

• fix bug of seqkit locate, e.g, only find two locations
  (1-4, 7-10, missing 4-7) of ACGA in ACGACGACGA.
• better output of seqkit stat for empty file.

SeqKit v0.3.9

_64-bit versions are highly recommended._

Changelog

• fix bug of region selection for blank sequences. affected commands include
  seqkit subseq --region, seqkit grep --region, seqkit split --by-region.
• compile with go1.8beta1.

SeqKit v0.3.8.1

_64-bit versions are highly recommended._

Changelog

• enhancement and bugfix of seqkit common: two or more same files allowed,
  fix log information of number of extracted sequences in the first file.

SeqKit v0.3.8

_64-bit versions are highly recommended._

Changelog

• enhancement of seqkit common: better handling of files containing replicated sequences

SeqKit v0.3.7

_64-bit versions are highly recommended._

Changelog

• fix bug in seqkit split --by-id when sequence ID contains invalid characters for system path. #2
• add more flags validation for seqkit replace.
• enhancement: raise error when key pattern matches multiple targes in cases of replacing with key-value files and more controls are added. #3
• changes: do not wrap sequence and quality in output for FASTQ format.

SeqKit v0.3.6

_64-bit versions are highly recommended._

Changelog

• add new feature for seqkit grep: new flag -R (--region) for specifying sequence region for searching.

SeqKit v0.3.5

_64-bit versions are highly recommended._

Changelog

• fig bug of seqkit grep: flag -i (--ignore-case) did not work when not using regular expression

SeqKit v0.3.4.1

_64-bit versions are highly recommended._

Changelog

• improve performance of reading (~10%) and writing (100%) gzip-compressed file
  by using github.com/klauspost/pgzip package
• add citation

seqkit v0.3.4

_64-bit versions are highly recommended._

Changelog

• bugfix: seq wrongly handles only the first one sequence file when multiple files given
• new feature: fxtab can output alphabet letters of a sequence by flag -a (--alphabet)
• new feature: new flag -K (--keep-key) for replace, when replacing
  with key-value file, one can choose keeping the key as value or not.

seqkit v0.3.3

_64-bit versions are highly recommended._

Changelog

• fix bug of seqkit replace, wrongly starting from 2 when using {nr}
  in -r (--replacement)
• new feature: seqkit replace supports replacement symbols {nr} (record number)
  and {kv} (corresponding value of the key