Skip to content

Centerline labels not the same dimensiosn as other labels or T1w #13

@mathieuboudreau

Description

@mathieuboudreau

First noticed by Sebastien, who uses them for his spine mesured B0 vs sim B0 project.

eg,

Last login: Wed Oct 30 23:45:22 on ttys017
/Users/mathieuboudreau/.zshrc:source:6: no such file or directory: /Applications/freesurfer/7.2.0/SetUpFreeSurfer.sh
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/sub-amuAL/anat/sub-amuAL_T1w.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/sub-amuAL/anat/sub-amuAL_T1w.nii.gz
data_type	FLOAT64
dim1		173
dim2		270
dim3		701
dim4		1
datatype	64
pixdim1		0.999997
pixdim2		1.000000
pixdim3		1.000000
pixdim4		1.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_label-brain_dseg.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_label-brain_dseg.nii.gz
data_type	INT32
dim1		173
dim2		270
dim3		701
dim4		1
datatype	8
pixdim1		0.999997
pixdim2		1.000000
pixdim3		1.000000
pixdim4		0.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_centerline.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_centerline.nii.gz
data_type	UINT8
dim1		173
dim2		243
dim3		523
dim4		1
datatype	2
pixdim1		1.000005
pixdim2		1.000000
pixdim3		1.000000
pixdim4		1.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % 

The BIDS sidecar for the centerline label is empty, so I don't know who made these labels or how they were made.

Screenshot 2024-10-31 at 10 18 18 PM

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions