Finalized 1a to 1c, the ROIs did not match really, I have now finxed … #21
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| name: Render and publish | |
| on: | |
| workflow_dispatch: | |
| push: | |
| # only for .qmd file and .yml files | |
| paths: | |
| - '**.qmd' | |
| - '**.yml' | |
| branches: | |
| - main | |
| - deepak | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: write | |
| pages: write | |
| id-token: write | |
| jobs: | |
| publish-site: | |
| runs-on: ubuntu-24.04-arm | |
| container: | |
| image: sibswiss/training-intro-spatial-transcriptomics-rstudio:latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Build site | |
| run: | | |
| quarto render | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v5 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v4 | |
| with: | |
| path: '_site/' | |
| - name: Deploy | |
| uses: peaceiris/actions-gh-pages@v4 | |
| if: github.ref == 'refs/heads/main' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_branch: gh-pages | |
| publish_dir: ./_site |