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Hi guys, I encountered some inconsistent sidora table formatting that caused me some confusion while trying to filter and join tables. In some columns where there's no entry a cell is left blank, while in others it's filled with NA. For example
df_list <- get_df_list(c(
"TAB_Library", "TAB_Capture", "TAB_Sequencing"
), con = con)
lib_info <- join_pandora_tables(df_list)
lib_info <- convert_all_ids_to_values(lib_info, con)
lib_info %>%
filter(str_detect(library.Full_Library_Id, "CMC040")) %>%
select(library.Full_Library_Id, library.Protocol, library.Batch, sequencing.Full_Sequencing_Id)
# A tibble: 3 × 4
library.Full_Library_Id library.Protocol library.Batch sequencing.Full_Sequencing_Id
<chr> <chr> <chr> <chr>
1 CMC040.A0201 dsLibrary non UDG 2015 "" NA
2 CMC040.B0101 dsLibrary non UDG 2015 "Li04_VE_2019-04-17" CMC040.B0101.SG1.1
3 CMC040.B0101 dsLibrary non UDG 2015 "Li04_VE_2019-04-17" CMC040.B0101.SG1.2
In Pandora the cell for the library batch is empty. Is this just an R/Pandora thing that has to be tolerated, or would it be possible to have this made consistent (everything is NA)?
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