Bump version: 1.4.1.9021 → 2.0.0

Author: sigven

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.4.1.9021
+current_version = 2.0.0
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\.(?P<dev>\d+))?

.github/workflows/build_conda_recipes.yaml

@@ -10,7 +10,7 @@ env:
   recipe_path: conda/recipe
   env_yml_path: conda/env/yml
   env_lock_path: conda/env/lock
-  VERSION: '1.4.1.9021' # versioned by bump2version
+  VERSION: '2.0.0' # versioned by bump2version
 jobs:
   build_pcgrr_conda_pkg:
     # When merging to one of the branches above and the commit message matches

conda/env/yml/pcgr.yml

@@ -6,7 +6,7 @@ channels:
   - conda-forge
 
 dependencies:
-  - pcgr::pcgr ==1.4.1.9021 # versioned by bump2version
+  - pcgr::pcgr ==2.0.0 # versioned by bump2version
   - bedtools
   - bcftools
   - cyvcf2

conda/env/yml/pcgrr.yml

@@ -7,7 +7,7 @@ channels:
 
 dependencies:
   - python
-  - pcgr::r-pcgrr ==1.4.1.9021 # versioned by bump2version
+  - pcgr::r-pcgrr ==2.0.0 # versioned by bump2version
   - pcgr::r-cpsr
   - r-argparse
   - bioconductor-bsgenome.hsapiens.ucsc.hg38

conda/env/yml/pkgdown.yml

@@ -4,7 +4,7 @@ channels:
   - bioconda
   - conda-forge
 dependencies:
-  - pcgr::r-pcgrr ==1.4.1.9021 # versioned by bump2version
+  - pcgr::r-pcgrr ==2.0.0 # versioned by bump2version
   - r-pkgdown
   - r-readr
   - r-glue

conda/recipe/pcgr/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: pcgr
-  version: 1.4.1.9021 # versioned by bump2version
+  version: 2.0.0 # versioned by bump2version
 
 source:
   path: ../../..

conda/recipe/pcgrr/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: r-pcgrr
-  version: 1.4.1.9021 # versioned by bump2version
+  version: 2.0.0 # versioned by bump2version
 
 source:
   path: ../../../pcgrr

pcgr/_version.py

@@ -1,2 +1,2 @@
 # versioned by bump2version
-__version__ = '1.4.1.9021'
+__version__ = '2.0.0'

pcgrr/DESCRIPTION

@@ -1,7 +1,7 @@
 Package: pcgrr
 Type: Package
 Title: Personal Cancer Genome ReporteR
-Version: 1.4.1.9021
+Version: 2.0.0
 Authors@R:
     c(person(given = "Sigve",
              family = "Nakken",

pcgrr/vignettes/installation.Rmd

@@ -15,7 +15,7 @@ require(glue, include.only = "glue")
 
 ```{r vars, echo=FALSE}
 Sys.setenv(VEP_VERSION = "112")
-Sys.setenv(PCGR_VERSION = "1.4.1.9021")
+Sys.setenv(PCGR_VERSION = "2.0.0")
 Sys.setenv(BUNDLE_VERSION = "20240621")
 VEP_VERSION <- Sys.getenv("VEP_VERSION")
 PCGR_VERSION <- Sys.getenv("PCGR_VERSION")