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Releases: sigven/pharmOncoX

v0.6.6

17 Jan 10:16

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  • Fixed bug in exported oncopharmadb data.frame
  • Updated biomarkers

v0.6.5

10 Jan 23:53

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  • NCI Thesaurus 2021.12d
  • Added preliminary set of drug biomarkers, data frames that can be acccessed directly through
    • oncoPharmaDB::compound_biomarkers$curated - curated evidence linking genomic aberrations to drug response - harvested from CIViC, CGI, and PMKB
    • oncoPharmaDB::compound_biomarkers$invitro_screen - from DepMap/PRISM, indicating predictive omics features of drug response in cancer cell lines

v0.6.3

03 Dec 09:04

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  • NCI Thesaurus update (v21.11e)

v0.6.2 - OTP 2021.11

25 Nov 19:16

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  • code/documentation improvements after devtools::check()
  • data from Open Targets Platform

v0.6.1

28 Oct 13:41

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  • Data update: NCI Thesaurus (21.10d)
  • Removed some redundant/non-informative columns of main data frame (oncopharmadb)
    • target_chembl_id
    • drug_synonyms
    • drug_description
    • drug_moa
    • drug_tradenames
    • cancer_drug
  • Documented exported data objects (oncopharmadb and oncopharma_synonyms)
  • Annotated gonadotropin releasing hormone analogues with hormone_therapy label
  • Added platinum_compound as a dedicated drug category (and as a column in oncopharmadb)
    • New argument is_platinum_compound to get_onco_drugs()

v0.6.0 - OTP 2021.09

30 Sep 15:49

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  • Retrieved latest drug collection (release 2021.09) from Open Targets Platform (ChEMBL++)

v0.5.4 - NCI update

29 Sep 11:23

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  • Fixed ambiguous assignment of drug categories
  • Updated NCI thesaurus to 21.09d

Initial release

24 Sep 10:24

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  • Initial release of oncoPharmaDB - R package to retrieve antineoplastic drugs
  • Users can query across targets, indications, action types etc.
  • Users can furthermore return resulting drug records at different "resolutions" (i.e. drug2target, drug2target2indication etc)