- 7 May 2026
- 30 April 2026
- 21 April 2026
- 9 April 2026
- 26 March 2026
- 5 March 2026
- 26 February 2026
- 19 February 2026
- 5 February 2026
- Template
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- Veronika with reviewing the draft
- Modified the draft based on feedback
- Nothing in particular.
- I also send the draft to COPL. Waiting to hear if they have any feedback
- Questions in overleaf.
- I'm visiting Hvidorve the 19th of May. Should we find a day where you can also visit?
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- Finished draft ish
- Finishing the draft
- Revise draft based on Veronikas feedback
- Should I write your name on the paper?
- Tank et al. has very high DICE scores compared to all other papers in the review. I suspect is because they do not do a proper split between training and test patients. Is this ok to question in my paper?
- Added another table with variability and data availability. Is it fine to do this as another table? Or is it better to do the vertical table that you mentioned last meeting?
- Does the PRISMA flow chart look ok?
- Conclusion at the end of the paper?
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- Wrote first draft of Segmentation and Classification section
- Made plots of publication year and dataset size
- In the beginning I struggled with what to include in the sections, but once I got started it got better
- Writing the Discussion
- Revise Segmentation and Classification section
- Are the chosen topics in each section ok? (Models used, performance metrics, what is segmented, types of classification in papers, comparison to COPL, comparing the 2 adenomyosis classification papers)
- Should I include the visualization I made? And should I make others? (you can find them in the visualizations notebook file)
- Questions in overleaf notes Segmentation section
- How to wrap up a section. Should I make some sort of short conclusion at the end of a section? And at the end of the paper
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- COPL getting access on my new computer
- Visited Hvidovre
- Made table of papers
- What to include in the table
- Starting writing the analysis
- What to include in the table and where to go from there
- COPL´s approach to AI
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- Read papers and wrote notes
- Wrote a section about how rare this field is, both because of ultrasound and adenomyosis.
- Understanding the model used in Bidirectional Copy–Paste Mamba for Enhanced Semi-Supervised Segmentation of Transvaginal Uterine Ultrasound Images
- Read the rest of the articles
- Excluding pregnancy related articles?
- Excluding articles that do not use ultrasound images as input to the model, but extract features from ultrasound as input. I would still mention them but exclude due to the obvious difference.
- Visiting Hvidovre hospital 8th of April.
- Exam date?
- How to write the results secion
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- Read and took notes to 2 more articles
- Now I'm done with the articles related to ML/DL in diagnosing adenomyosis
- The search
(uterus OR uterine) AND ("machine learning" OR "deep learning" OR "artificial intelligence" OR "neural network*") AND ultrasound AND transvaginalyielded 890 results- 44 left after removing duplicates and filtering for ML/DL/NN and transvaginal ultrasound
- This is what I did in the beginning where I found 11 interesting articles
- 119 left after removing duplicates and filtering for ML/DL/NN and ultrasound
- I realized that "transvaginal ultrasound" might have been a bit too narrow, so I filtered for ultrasound instead
- When I try to manually filter these I get a little overwhelmed and confused about I should actually include
- Should I include articles that are using 2D ultrasound as input or only 3D?
- Should I include articles that related to cancer in the uterus?
- Should I include literature other reviews?
- 44 left after removing duplicates and filtering for ML/DL/NN and transvaginal ultrasound
- Find the relevant uterus articles and start reading them
- What I should filter based on, as described above
- When should I begin writing my overleaf notes into actual text I can use in the paper?
- Your notes about how uncommon ultrasound is
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- Read and took notes to 2 articles
- Found 11 articles that looks interesting from the query:
(uterus OR uterine) AND ("machine learning" OR "deep learning" OR "artificial intelligence" OR "neural network*") AND ultrasound AND transvaginal
- Making a strucured review for a big area of research: transfer learning in medical imaging
- Read and take notes to 2 more articles
- How to select articles using the PRISMA guidelines in transfer learning in medical imaging
- You found some articles last time, but to do it the PRISMA way I cannot just select some articles because you found them for me, right?
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- COPL reviewing my problem statement
- Had an online meeting with COPL
- Only focussing on literautre about adenomyosis is too strict
- They suggested a meeting with you as well. I suggested Thursday when we usually have meetings, but TBD.
- Data only available on their computers. I will get a laptop soon.
- Started finding articles using PRISMA systematic review
- Searched lens.org, PubMed and IEEE with the query:
adenomyosis AND ultrasound AND ("machine learning" OR "deep learning" OR "artificial intelligence" OR "neural network*")- Filtered for adenomyosis in title or abstract.
- Manual filtering after
- Found 4 articles that seem interesting - Automatic uterus segmentation in transvaginal ultrasound using U-Net and nnU-Net - Artificial Intelligence in the Management of Women with Endometriosis and Adenomyosis: Can Machines Ever Be Worse Than Humans? - Application of Deep Learning Model in the Sonographic Diagnosis of Uterine Adenomyosis - Automatic diagnosis for adenomyosis in ultrasound images by deep neural networks
- Found 2 articles I cannot access:
- Found one that is not a full article:
- Searched lens.org, PubMed and IEEE with the query:
- New field, new words I don't know
- Read articles
- Do I need to search other databases than the ones I did?
- Problem statement
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- Read the 2 research papers available in the PURRlab guide
- I got some literature from the hospital to read
- Read the paper Automatic Segmentation and Alignment of Uterine Shapes from 3D Ultrasound Data
- Scheduling a meeting with the hospital
- Scheduling a meeting with the hospital
- Reading more papers, but which ones?
- Replace this text with a bullet point list of what you need help from Veronika on.
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- AI use
- Direction of research project
- Literature review, but what to focus on?
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- It's ok if your list is only one bullet point long!
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- It's ok if your list is only one bullet point long!
- Try to estimate how long each task will take.
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