CA3-CA1-Network-Learning-Stability/initialization.yaml at main · simahashemi/CA3-CA1-Network-Learning-Stability · GitHub

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# Configuration file for sim_rewiring_ex1.py
---
master_seed: 10
simulation_time: 1000.0
number_of_sequence_repetition: 1000
sampling_interval_weights: 0.3
num_neurons: 100

input_parameters:
    num_inputs: 270
    pattern_delay: 0.060
    pattern_duration: 0.060
    delay_between_sequences: 0.0
    num_patterns_per_assembly: 1
    num_assemblies: 9
    assembly_size: 30
    rate: 100.0
    rate_bg: 1.0

connection_parameters:
    n_syn_start: 10
    n_syn_max_AcD: 18
    n_syn_max_nonAcD: 10

    w_max: 8.0
    w_ini_min: 6.0
    w_ini_max: 8.0
    theta_ini: -0.5
    theta_min: -2.0

    T: 0.3
    eta: 0.002

    scale_prior: 1.0
    lambd: 10.0
    scale_w: 0.55
    grad_sigmoid_clip: 8.0

    scale_likelihood: 1.5
    gamma: 1.0


    A: 0.0
    c_BAP: 5.5
    gamma_BAP: 1.0
    BAP_active: True

    scale_theta: 1.0

    tau_pre: 20e-3
    tau_post: 20e-3


neuron_parameters:
    num_branches: 3

    branch_parameters:
        AcD_num: 50
        nonAcD_num: 50

        branch_dynamics: True

        v_thr: -50.0
        v_rest: -67.0
        r_mem: 10e6    #Memmesheimer model(2ms integration time window on dendrites)
        c_mem: 200e-12 #Memmesheimer model(2ms integration time window on dendrites)
        tau_syn: 2.0e-3 #Memmesheimer model(2ms integration time window on dendrites)
        dendrite_refractory_period: 5.0e-3
        d_spike_rise_time: 1e-3
        d_spike_decay_time: 4.0e-3
        dendritic_spike_max_amp: 2.0e-9
        constant_input_amp: 0.0

        inh_amp: 0.0
        inh_freq: 0.0
        inh_phase: 0.0


    soma_parameters:
        AcD_num: 50
        nonAcD_num: 50

        PC_c_mem: 275e-12
        PC_r_mem: 40e6
        PC_v_rest: -67.0
        PC_v_reset: -67.0
        PC_v_thr: -55.0
        PC_refractory_period: 2e-3

        inh_amp: -0.7e-9
        inh_freq: 0.0
        inh_phase: 0.0

        tau_syn: 2e-3
        tau_inh: 2e-3