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changed version in pom and swichted licence to MIT
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.idea/libraries/Maven__uk_ac_ebi_beam_beam_core_1_3_3.xml renamed to .idea/libraries/Maven__uk_ac_ebi_beam_beam_core_1_2_1.xml

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.idea/libraries/Maven__uk_ac_ebi_beam_beam_func_1_3_3.xml renamed to .idea/libraries/Maven__uk_ac_ebi_beam_beam_func_1_2_1.xml

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LICENSE.md

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README.md

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@@ -17,7 +17,7 @@ SiNGA is deployed to the [Maven Central Repository](https://mvnrepository.com/ar
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<dependency>
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<groupId>bio.singa</groupId>
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<artifactId>singa-[module]</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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</dependency>
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<!-- more dependencies -->
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</dependencies>

singa-all/pom.xml

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<packaging>pom</packaging>
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<groupId>bio.singa</groupId>
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<artifactId>singa-all</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<name>singa-all</name>
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<description>
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SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially

singa-chemistry/pom.xml

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<parent>
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<artifactId>singa-all</artifactId>
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<groupId>bio.singa</groupId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<relativePath>../singa-all/pom.xml</relativePath>
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</parent>
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<artifactId>singa-chemistry</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<packaging>jar</packaging>
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<description>
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The chemistry package of SiNGA handles aspects that range into chemoinformatics, such as parsing and
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<dependency>
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<groupId>bio.singa</groupId>
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<artifactId>singa-structure</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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</dependency>
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<dependency>
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<groupId>uk.ac.ebi.beam</groupId>

singa-chemistry/singa-chemistry.iml

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<orderEntry type="library" name="Maven: commons-lang:commons-lang:2.4" level="project" />
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<orderEntry type="library" scope="RUNTIME" name="Maven: org.apache.logging.log4j:log4j-api:2.6.2" level="project" />
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<orderEntry type="library" name="Maven: org.rcsb:mmtf-api:1.0.8" level="project" />
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<orderEntry type="library" name="Maven: uk.ac.ebi.beam:beam-core:1.3.3" level="project" />
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<orderEntry type="library" name="Maven: uk.ac.ebi.beam:beam-func:1.3.3" level="project" />
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<orderEntry type="library" name="Maven: uk.ac.ebi.beam:beam-core:1.2.1" level="project" />
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<orderEntry type="library" name="Maven: uk.ac.ebi.beam:beam-func:1.2.1" level="project" />
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<orderEntry type="library" scope="TEST" name="Maven: org.junit.jupiter:junit-jupiter-api:5.3.1" level="project" />
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<orderEntry type="library" scope="TEST" name="Maven: org.apiguardian:apiguardian-api:1.0.0" level="project" />
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<orderEntry type="library" scope="TEST" name="Maven: org.opentest4j:opentest4j:1.1.1" level="project" />

singa-core/pom.xml

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<parent>
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<artifactId>singa-all</artifactId>
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<groupId>bio.singa</groupId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<relativePath>../singa-all/pom.xml</relativePath>
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</parent>
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<artifactId>singa-core</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<packaging>jar</packaging>
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<description>
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The SiNGA core package contains some convenience methods and data structures required in most other SiNGA

singa-features/pom.xml

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<parent>
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<artifactId>singa-all</artifactId>
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<groupId>bio.singa</groupId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<relativePath>../singa-all/pom.xml</relativePath>
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</parent>
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<artifactId>singa-features</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<packaging>jar</packaging>
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<description>
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The features package of SiNGA allows for automated retrieval and annotation of features to arbitrary data

singa-javafx/pom.xml

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<parent>
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<artifactId>singa-all</artifactId>
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<groupId>bio.singa</groupId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<relativePath>../singa-all/pom.xml</relativePath>
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</parent>
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<artifactId>singa-javafx</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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<packaging>jar</packaging>
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<description>
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The javafx package of SiNGA provides methods to render visual representations SiNGA data structures in javafx
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<dependency>
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<groupId>bio.singa</groupId>
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<artifactId>singa-chemistry</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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</dependency>
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<dependency>
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<groupId>bio.singa</groupId>
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<artifactId>singa-sequence</artifactId>
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<version>0.5.0</version>
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<version>0.6.0</version>
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</dependency>
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</dependencies>
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