-
Notifications
You must be signed in to change notification settings - Fork 69
Open
Description
Describe the bug
A clear and concise description of what the bug is.
the program fails to compile
To Reproduce
Give exact command you ran. When you run ASTRAL, make sure you keep the standard error (e.g., by adding 2>astral.log to the end of your command).
git clone https://github.com/smirarab/ASTRAL
cd ASTRAL
./make.sh
Log file
Send us the log file (standard error of ASTRAL)
++ grep _versinon main/phylonet/coalescent/CommandLine.java
++ grep String
++ sed -e 's/.*= .//g' -e 's/.;//g'
+ version=5.7.8
+ echo Version 5.7.8
Version 5.7.8
+ cd main
+ rm -f 'phylonet/coalescent/*.class' phylonet/util/BitSet.class 'phylonet/tree/model/sti/STITreeCluster*.class' phylonet/tree/io/NewickWriter.class
+ javac -source 1.6 -target 1.6 -classpath ../lib/main.jar:../lib/colt.jar:../lib/JSAP-2.1.jar phylonet/util/BitSet.java phylonet/coalescent/AbstractClusterCollection.java phylonet/coalescent/AbstractComputeMinCostTask.java phylonet/coalescent/AbstractDataCollection.java phylonet/coalescent/AbstractInference.java phylonet/coalescent/AbstractPartition.java phylonet/coalescent/AbstractWeightCalculator.java phylonet/coalescent/BipartitionWeightCalculator.java phylonet/coalescent/CannotResolveException.java phylonet/coalescent/CommandLine.java phylonet/coalescent/DeepCoalescencesCounter.java phylonet/coalescent/DLClusterCollection.java phylonet/coalescent/DLComputeMinCostTask.java phylonet/coalescent/DLDataCollection.java phylonet/coalescent/DLInference.java phylonet/coalescent/DLWeightCalculator.java phylonet/coalescent/GlobalMaps.java phylonet/coalescent/IClusterCollection.java phylonet/coalescent/Options.java phylonet/coalescent/Polytomy.java phylonet/coalescent/Polytree.java phylonet/coalescent/Posterior.java phylonet/coalescent/QuartetCollection.java phylonet/coalescent/SimilarityMatrix.java phylonet/coalescent/SingleIndividualSample.java phylonet/coalescent/Solution.java phylonet/coalescent/SpeciesMapper.java phylonet/coalescent/STBipartition.java phylonet/coalescent/TaxonIdentifier.java phylonet/coalescent/TaxonNameMap.java phylonet/coalescent/Tripartition.java phylonet/coalescent/Utils.java phylonet/coalescent/WQClusterCollection.java phylonet/coalescent/WQComputeMinCostTask.java phylonet/coalescent/WQDataCollection.java phylonet/coalescent/WQInference.java phylonet/coalescent/WQWeightCalculator.java phylonet/tree/model/sti/STITreeCluster.java phylonet/tree/io/NewickWriter.java
warning: [options] bootstrap class path not set in conjunction with -source 6
error: Source option 6 is no longer supported. Use 7 or later.
error: Target option 6 is no longer supported. Use 7 or later.
** Version
Additional context
Add any other context about the problem here.
Metadata
Metadata
Assignees
Labels
No labels