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stefanks
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Merge pull request #228 from smith-chem-wisc/StefanBranch
Stefan branch
2 parents d3a8174 + 192f6ed commit 563ed7e

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11 files changed

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-99
lines changed

11 files changed

+116
-99
lines changed

‎CMD/CMD.csproj‎

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -35,40 +35,40 @@
3535
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3636
</PropertyGroup>
3737
<ItemGroup>
38-
<Reference Include="Chemistry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
39-
<HintPath>..\packages\mzLib.1.0.103\lib\Chemistry.dll</HintPath>
38+
<Reference Include="Chemistry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
39+
<HintPath>..\packages\mzLib.1.0.104\lib\Chemistry.dll</HintPath>
4040
<Private>True</Private>
4141
</Reference>
42-
<Reference Include="MassSpectrometry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
43-
<HintPath>..\packages\mzLib.1.0.103\lib\MassSpectrometry.dll</HintPath>
42+
<Reference Include="MassSpectrometry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
43+
<HintPath>..\packages\mzLib.1.0.104\lib\MassSpectrometry.dll</HintPath>
4444
<Private>True</Private>
4545
</Reference>
4646
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4747
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
4848
<Private>True</Private>
4949
</Reference>
50-
<Reference Include="mzIdentML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
51-
<HintPath>..\packages\mzLib.1.0.103\lib\mzIdentML.dll</HintPath>
50+
<Reference Include="mzIdentML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
51+
<HintPath>..\packages\mzLib.1.0.104\lib\mzIdentML.dll</HintPath>
5252
<Private>True</Private>
5353
</Reference>
54-
<Reference Include="MzLibUtil, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
55-
<HintPath>..\packages\mzLib.1.0.103\lib\MzLibUtil.dll</HintPath>
54+
<Reference Include="MzLibUtil, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
55+
<HintPath>..\packages\mzLib.1.0.104\lib\MzLibUtil.dll</HintPath>
5656
<Private>True</Private>
5757
</Reference>
58-
<Reference Include="MzML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
59-
<HintPath>..\packages\mzLib.1.0.103\lib\MzML.dll</HintPath>
58+
<Reference Include="MzML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
59+
<HintPath>..\packages\mzLib.1.0.104\lib\MzML.dll</HintPath>
6060
<Private>True</Private>
6161
</Reference>
6262
<Reference Include="NetSerializer, Version=4.1.0.0, Culture=neutral, processorArchitecture=MSIL">
6363
<HintPath>..\packages\NetSerializer.4.1.0\lib\net45\NetSerializer.dll</HintPath>
6464
<Private>True</Private>
6565
</Reference>
66-
<Reference Include="Proteomics, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
67-
<HintPath>..\packages\mzLib.1.0.103\lib\Proteomics.dll</HintPath>
66+
<Reference Include="Proteomics, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
67+
<HintPath>..\packages\mzLib.1.0.104\lib\Proteomics.dll</HintPath>
6868
<Private>True</Private>
6969
</Reference>
70-
<Reference Include="Spectra, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
71-
<HintPath>..\packages\mzLib.1.0.103\lib\Spectra.dll</HintPath>
70+
<Reference Include="Spectra, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
71+
<HintPath>..\packages\mzLib.1.0.104\lib\Spectra.dll</HintPath>
7272
<Private>True</Private>
7373
</Reference>
7474
<Reference Include="System" />
@@ -80,12 +80,12 @@
8080
<Reference Include="System.Data" />
8181
<Reference Include="System.Net.Http" />
8282
<Reference Include="System.Xml" />
83-
<Reference Include="Thermo, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
84-
<HintPath>..\packages\mzLib.1.0.103\lib\Thermo.dll</HintPath>
83+
<Reference Include="Thermo, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
84+
<HintPath>..\packages\mzLib.1.0.104\lib\Thermo.dll</HintPath>
8585
<Private>True</Private>
8686
</Reference>
87-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
88-
<HintPath>..\packages\mzLib.1.0.103\lib\UsefulProteomicsDatabases.dll</HintPath>
87+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
88+
<HintPath>..\packages\mzLib.1.0.104\lib\UsefulProteomicsDatabases.dll</HintPath>
8989
<Private>True</Private>
9090
</Reference>
9191
<Reference Include="Zlib.Portable, Version=1.11.0.0, Culture=neutral, processorArchitecture=MSIL">

‎CMD/packages.config‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
<?xml version="1.0" encoding="utf-8"?>
22
<packages>
33
<package id="MathNet.Numerics" version="3.17.0" targetFramework="net451" />
4-
<package id="mzLib" version="1.0.103" targetFramework="net451" />
4+
<package id="mzLib" version="1.0.104" targetFramework="net451" />
55
<package id="NetSerializer" version="4.1.0" targetFramework="net451" />
66
<package id="Zlib.Portable" version="1.11.0" targetFramework="net451" />
77
</packages>

‎EngineLayer/CalibrationEngine/CalibrationEngine.cs‎

Lines changed: 21 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -217,20 +217,37 @@ private Tuple<CalibrationFunction, CalibrationFunction> Calibrate(DataPointAquis
217217
transforms.Add(new TransformFunction(b => new double[] { b[1] }, 1));
218218
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[2]) }, 1));
219219
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[3]) }, 1));
220+
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[4]) }, 1));
220221

221222
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1] }, 2));
222223
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[2]) }, 2));
223224
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[3]) }, 2));
225+
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[4]) }, 2));
224226
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[2]) }, 2));
225227
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[3]) }, 2));
228+
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[4]) }, 2));
226229
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[2]), Math.Log(b[3]) }, 2));
230+
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[2]), Math.Log(b[4]) }, 2));
231+
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[3]), Math.Log(b[4]) }, 2));
227232

228233
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[2]) }, 3));
229234
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[3]) }, 3));
235+
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[4]) }, 3));
230236
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[2]), Math.Log(b[3]) }, 3));
237+
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[2]), Math.Log(b[4]) }, 3));
238+
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[3]), Math.Log(b[4]) }, 3));
231239
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[2]), Math.Log(b[3]) }, 3));
240+
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[2]), Math.Log(b[4]) }, 3));
241+
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[3]), Math.Log(b[4]) }, 3));
242+
transforms.Add(new TransformFunction(b => new double[] { Math.Log(b[2]), Math.Log(b[3]), Math.Log(b[4]) }, 3));
232243

233244
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[2]), Math.Log(b[3]) }, 4));
245+
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[2]), Math.Log(b[4]) }, 4));
246+
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[3]), Math.Log(b[4]) }, 4));
247+
transforms.Add(new TransformFunction(b => new double[] { b[0], Math.Log(b[2]), Math.Log(b[3]), Math.Log(b[4]) }, 4));
248+
transforms.Add(new TransformFunction(b => new double[] { b[1], Math.Log(b[2]), Math.Log(b[3]), Math.Log(b[4]) }, 4));
249+
250+
transforms.Add(new TransformFunction(b => new double[] { b[0], b[1], Math.Log(b[2]), Math.Log(b[3]), Math.Log(b[4]) }, 5));
234251

235252
foreach (var transform in transforms)
236253
{
@@ -324,23 +341,23 @@ private void CalibrateSpectra(Tuple<CalibrationFunction, CalibrationFunction> be
324341
theScan.RecomputeSelectedPeak(precursorScan.MassSpectrum);
325342
double precursorMZ = theScan.SelectedIonGuessMZ.Value;
326343
double precursorIntensity = theScan.SelectedIonGuessIntensity.Value;
327-
double newSelectedMZ = precursorMZ - bestCf.Item2.Predict(new double[] { precursorMZ, precursorScan.RetentionTime, precursorIntensity, precursorScan.TotalIonCurrent });
344+
double newSelectedMZ = precursorMZ - bestCf.Item1.Predict(new double[] { precursorMZ, precursorScan.RetentionTime, precursorIntensity, precursorScan.TotalIonCurrent, precursorScan.InjectionTime.Value });
328345

329346
if (!theScan.SelectedIonGuessMonoisotopicMZ.HasValue || !theScan.SelectedIonGuessMonoisotopicIntensity.HasValue)
330347
theScan.RecomputeMonoisotopicPeak(precursorScan.MassSpectrum, 0.01, 0.3);
331348
double monoisotopicMZ = theScan.SelectedIonGuessMonoisotopicMZ.Value;
332349
double monoisotopicIntensity = theScan.SelectedIonGuessMonoisotopicIntensity.Value;
333350

334-
double newMonoisotopicMZ = monoisotopicMZ - bestCf.Item2.Predict(new double[] { monoisotopicMZ, precursorScan.RetentionTime, monoisotopicIntensity, precursorScan.TotalIonCurrent });
351+
double newMonoisotopicMZ = monoisotopicMZ - bestCf.Item1.Predict(new double[] { monoisotopicMZ, precursorScan.RetentionTime, monoisotopicIntensity, precursorScan.TotalIonCurrent, precursorScan.InjectionTime.Value });
335352

336353
double IsolationMZ = theScan.IsolationMz;
337-
Func<IMzPeak, double> theFunc = x => x.Mz - bestCf.Item2.Predict(new double[] { x.Mz, a.RetentionTime, x.Intensity, a.TotalIonCurrent, IsolationMZ });
354+
Func<IMzPeak, double> theFunc = x => x.Mz - bestCf.Item2.Predict(new double[] { x.Mz, a.RetentionTime, x.Intensity, a.TotalIonCurrent, a.InjectionTime.Value, IsolationMZ });
338355

339356
theScan.TranformByApplyingFunctionsToSpectraAndReplacingPrecursorMZs(theFunc, newSelectedMZ, newMonoisotopicMZ);
340357
}
341358
else
342359
{
343-
Func<IMzPeak, double> theFunc = x => x.Mz - bestCf.Item1.Predict(new double[] { x.Mz, a.RetentionTime, x.Intensity, a.TotalIonCurrent });
360+
Func<IMzPeak, double> theFunc = x => x.Mz - bestCf.Item1.Predict(new double[] { x.Mz, a.RetentionTime, x.Intensity, a.TotalIonCurrent, a.InjectionTime.Value });
344361
a.TransformByApplyingFunctionToSpectra(theFunc);
345362
}
346363
}

‎EngineLayer/EngineLayer.csproj‎

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -34,36 +34,36 @@
3434
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3535
</PropertyGroup>
3636
<ItemGroup>
37-
<Reference Include="Chemistry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
38-
<HintPath>..\packages\mzLib.1.0.103\lib\Chemistry.dll</HintPath>
37+
<Reference Include="Chemistry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
38+
<HintPath>..\packages\mzLib.1.0.104\lib\Chemistry.dll</HintPath>
3939
<Private>True</Private>
4040
</Reference>
41-
<Reference Include="MassSpectrometry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
42-
<HintPath>..\packages\mzLib.1.0.103\lib\MassSpectrometry.dll</HintPath>
41+
<Reference Include="MassSpectrometry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
42+
<HintPath>..\packages\mzLib.1.0.104\lib\MassSpectrometry.dll</HintPath>
4343
<Private>True</Private>
4444
</Reference>
4545
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4646
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
4747
<Private>True</Private>
4848
</Reference>
49-
<Reference Include="mzIdentML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
50-
<HintPath>..\packages\mzLib.1.0.103\lib\mzIdentML.dll</HintPath>
49+
<Reference Include="mzIdentML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
50+
<HintPath>..\packages\mzLib.1.0.104\lib\mzIdentML.dll</HintPath>
5151
<Private>True</Private>
5252
</Reference>
53-
<Reference Include="MzLibUtil, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
54-
<HintPath>..\packages\mzLib.1.0.103\lib\MzLibUtil.dll</HintPath>
53+
<Reference Include="MzLibUtil, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
54+
<HintPath>..\packages\mzLib.1.0.104\lib\MzLibUtil.dll</HintPath>
5555
<Private>True</Private>
5656
</Reference>
57-
<Reference Include="MzML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
58-
<HintPath>..\packages\mzLib.1.0.103\lib\MzML.dll</HintPath>
57+
<Reference Include="MzML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
58+
<HintPath>..\packages\mzLib.1.0.104\lib\MzML.dll</HintPath>
5959
<Private>True</Private>
6060
</Reference>
61-
<Reference Include="Proteomics, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
62-
<HintPath>..\packages\mzLib.1.0.103\lib\Proteomics.dll</HintPath>
61+
<Reference Include="Proteomics, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
62+
<HintPath>..\packages\mzLib.1.0.104\lib\Proteomics.dll</HintPath>
6363
<Private>True</Private>
6464
</Reference>
65-
<Reference Include="Spectra, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
66-
<HintPath>..\packages\mzLib.1.0.103\lib\Spectra.dll</HintPath>
65+
<Reference Include="Spectra, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
66+
<HintPath>..\packages\mzLib.1.0.104\lib\Spectra.dll</HintPath>
6767
<Private>True</Private>
6868
</Reference>
6969
<Reference Include="System" />
@@ -74,12 +74,12 @@
7474
<Reference Include="System.Data" />
7575
<Reference Include="System.Net.Http" />
7676
<Reference Include="System.Xml" />
77-
<Reference Include="Thermo, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
78-
<HintPath>..\packages\mzLib.1.0.103\lib\Thermo.dll</HintPath>
77+
<Reference Include="Thermo, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
78+
<HintPath>..\packages\mzLib.1.0.104\lib\Thermo.dll</HintPath>
7979
<Private>True</Private>
8080
</Reference>
81-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
82-
<HintPath>..\packages\mzLib.1.0.103\lib\UsefulProteomicsDatabases.dll</HintPath>
81+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
82+
<HintPath>..\packages\mzLib.1.0.104\lib\UsefulProteomicsDatabases.dll</HintPath>
8383
<Private>True</Private>
8484
</Reference>
8585
<Reference Include="Zlib.Portable, Version=1.11.0.0, Culture=neutral, processorArchitecture=MSIL">

‎EngineLayer/packages.config‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<?xml version="1.0" encoding="utf-8"?>
22
<packages>
33
<package id="MathNet.Numerics" version="3.17.0" targetFramework="net451" />
4-
<package id="mzLib" version="1.0.103" targetFramework="net451" />
4+
<package id="mzLib" version="1.0.104" targetFramework="net451" />
55
<package id="Zlib.Portable" version="1.11.0" targetFramework="net451" />
66
</packages>

‎GUI/GUI.csproj‎

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -37,36 +37,36 @@
3737
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3838
</PropertyGroup>
3939
<ItemGroup>
40-
<Reference Include="Chemistry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
41-
<HintPath>..\packages\mzLib.1.0.103\lib\Chemistry.dll</HintPath>
40+
<Reference Include="Chemistry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
41+
<HintPath>..\packages\mzLib.1.0.104\lib\Chemistry.dll</HintPath>
4242
<Private>True</Private>
4343
</Reference>
44-
<Reference Include="MassSpectrometry, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
45-
<HintPath>..\packages\mzLib.1.0.103\lib\MassSpectrometry.dll</HintPath>
44+
<Reference Include="MassSpectrometry, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
45+
<HintPath>..\packages\mzLib.1.0.104\lib\MassSpectrometry.dll</HintPath>
4646
<Private>True</Private>
4747
</Reference>
4848
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4949
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
5050
<Private>True</Private>
5151
</Reference>
52-
<Reference Include="mzIdentML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
53-
<HintPath>..\packages\mzLib.1.0.103\lib\mzIdentML.dll</HintPath>
52+
<Reference Include="mzIdentML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
53+
<HintPath>..\packages\mzLib.1.0.104\lib\mzIdentML.dll</HintPath>
5454
<Private>True</Private>
5555
</Reference>
56-
<Reference Include="MzLibUtil, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
57-
<HintPath>..\packages\mzLib.1.0.103\lib\MzLibUtil.dll</HintPath>
56+
<Reference Include="MzLibUtil, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
57+
<HintPath>..\packages\mzLib.1.0.104\lib\MzLibUtil.dll</HintPath>
5858
<Private>True</Private>
5959
</Reference>
60-
<Reference Include="MzML, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
61-
<HintPath>..\packages\mzLib.1.0.103\lib\MzML.dll</HintPath>
60+
<Reference Include="MzML, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
61+
<HintPath>..\packages\mzLib.1.0.104\lib\MzML.dll</HintPath>
6262
<Private>True</Private>
6363
</Reference>
64-
<Reference Include="Proteomics, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
65-
<HintPath>..\packages\mzLib.1.0.103\lib\Proteomics.dll</HintPath>
64+
<Reference Include="Proteomics, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
65+
<HintPath>..\packages\mzLib.1.0.104\lib\Proteomics.dll</HintPath>
6666
<Private>True</Private>
6767
</Reference>
68-
<Reference Include="Spectra, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
69-
<HintPath>..\packages\mzLib.1.0.103\lib\Spectra.dll</HintPath>
68+
<Reference Include="Spectra, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
69+
<HintPath>..\packages\mzLib.1.0.104\lib\Spectra.dll</HintPath>
7070
<Private>True</Private>
7171
</Reference>
7272
<Reference Include="System" />
@@ -81,12 +81,12 @@
8181
<Reference Include="System.Xaml">
8282
<RequiredTargetFramework>4.0</RequiredTargetFramework>
8383
</Reference>
84-
<Reference Include="Thermo, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
85-
<HintPath>..\packages\mzLib.1.0.103\lib\Thermo.dll</HintPath>
84+
<Reference Include="Thermo, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
85+
<HintPath>..\packages\mzLib.1.0.104\lib\Thermo.dll</HintPath>
8686
<Private>True</Private>
8787
</Reference>
88-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.103.0, Culture=neutral, processorArchitecture=AMD64">
89-
<HintPath>..\packages\mzLib.1.0.103\lib\UsefulProteomicsDatabases.dll</HintPath>
88+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.104.0, Culture=neutral, processorArchitecture=AMD64">
89+
<HintPath>..\packages\mzLib.1.0.104\lib\UsefulProteomicsDatabases.dll</HintPath>
9090
<Private>True</Private>
9191
</Reference>
9292
<Reference Include="WindowsBase" />

‎GUI/packages.config‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<?xml version="1.0" encoding="utf-8"?>
22
<packages>
33
<package id="MathNet.Numerics" version="3.17.0" targetFramework="net451" />
4-
<package id="mzLib" version="1.0.103" targetFramework="net451" />
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<package id="mzLib" version="1.0.104" targetFramework="net451" />
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<package id="Zlib.Portable" version="1.11.0" targetFramework="net451" />
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</packages>

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