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ChangeLog
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2024-09-07: Ver. 0.2-16
* Use M_PI for PI which is removed in R C/C++ headers since R 4.5.0.
2023-09-03: Ver. 0.2-15
* Remove the meta table from the doc.
* Modify CITATION.
2022-08-12: Ver. 0.2-14
* Use is() to replace class() inside if().
* Fix LaTeX symble in man for KaTeX conversion.
* Remove PPtree from enhance.
2021-11-06: Ver. 0.2-14
* Add e-mail.
2021-03-08: Ver. 0.2-13
* Add a calloc to "src/R_init_svd.c" to avoid errors detected by valgrind.
* Change http to https.
2020-04-30: Ver. 0.2-13
* Add a demo example that uses oversize k for semi-supervised clustering.
* Add a restriction to init.EM() where sufficient unlabeled data should be
checked for initializing oversize k.
2019-03-20: Ver. 0.2-12
* Push some PROTECT and UNPROTECT back within the call.
2019-03-07: Ver. 0.2-11
* Move PROTECT and UNPROTCT to the caller function.
2018-03-17: Ver. 0.2-11
* Fix conv.iter and conv.eps for most C functions.
2018-03-11: Ver. 0.2-11
* Return conv.iter and conv.eps for emcluster(), emgroup(), and their
semi-supervise version if any.
2018-01-30: Ver. 0.2-10
* Adjusting for CRAN requests.
2018-01-27: Ver. 0.2-10
* Reordering LAPACK_LIBS, BLAS_LIBS, and FLIBS in "src/Makevars".
2018-01-14: Ver. 0.2-9
* Replace recolor.r
2017-06-04: Ver. 0.2-8
* Fix UNPROTECT problems. DO NOT add UNPROTECT(*) to
EMCluster/src/it_R_emptr.c. It will be done outside of that call by the
caller. It is only to allocated space which is pointed by a poninter!
2017-04-07: Ver. 0.2-7
* Add UNPROTECT(8); to EMCluster/src/it_R_emptr.c.
2017-03-17: Ver. 0.2-7
* Rename emobj$M to emobj$adjM.
2015-10-31: Ver. 0.2-6
* Change recolor() and add rematch() and recode().
* Change url address.
2015-10-19: Ver. 0.2-5
* Fix an adjR seg. fault.
* Add recolor().
2015-07-18: Ver. 0.2-5
* Several changes.
* Rename partial.logL() to partial.q() and change all other caller functions.
* Add partial.logL().
* Add logitPI = TRUE to partial.q() and partial.logL().
* Normalize pi at the end of EM for functions returning emobj.
* Add log = FALSE to dmixmvn().
* Add Jaccard.Index().
* Change man pages.
* Change authorship.
2015-07-05: Ver. 0.2-5
* Add logit post I information.
2015-03-07: Ver. 0.2-5
* Fix typos and problems of new version of R.
* Change lmt options.
2013-01-13: Ver. 0.2-5
* Fix more lmt and ppcontour plotting bugs.
2013-01-03: Ver. 0.2-5
* Add and test lmt and ppcontour.
2013-12-14: Ver. 0.2-4
* Move vignettes.
2013-07-02: Ver. 0.2-4
* Fix variance2LTSigma for 1 dimension case.
2013-01-30: Ver. 0.2-3
* Fix man page authorship typos.
* Fix uninitialed variables problem.
2012-12-23: Ver. 0.2-2
* Fix .Last.load problem.
2012-12-06: Ver. 0.2-1
* Fix authorship typos.
2012-12-05: Ver. 0.2-0
* Add man, vignette, and all required files for CRAN.
======================= Log for C Code =====================================
* All Dr. Maitra's codes are kept in the original files and names.
* Some original functions are modified inside the original files
with same function names.
* Some extra functions are extended and saved separately.
* All generic functions are stored in files with function's name and
aheaded with "M_".
* All R call function are stored in files with function's name and
aheaded with "R_".
* All semi-supervised clustering are stored in files with function's name and
adheaded with "ss_".
* Header files "mb_tool.h" and "ss_mb_tool.h" collect major functions except
files and functions aheaded with "R_".
* All functions with counting iterations and times in files with function's
name and adheaded with "it_".
Modifiled: Wei-Chen Chen on 2009/04/27.
======================= Log Before Release =====================================
2010-05-07: Ver. 0.1-18
* Add checks in decreasing logL.
2009-08-18: Ver. 0.1-17
* Add adapted candidated initializations.
2009-06-17: Ver. 0.1-16
* Rewrite EM step to ME step.
2009-06-09: Ver. 0.1-15
* Add clock ticks.
* Rewrite emobj in C structure.
2009-03-17: Ver. 0.1-14
* Fix possible bugs in semi-supervise clustering methods.
2009-03-15: Ver. 0.1-13
* Add all semi-supervise clustering methods.
2009-03-08: Ver. 0.1-12
* Modify model-based randomEMinit() for original methods.
2009-02-16: Ver. 0.1-11
* Add model-based initializer in C.
* Add rand.EM and rand.em.EM methods.
* Simplify model-based initializer in C and fix bugs.
2009-01-19: Ver. 0.1-10
* Add shortemcluster().
* RRand requires long integers for 64-bit machine.
* Fix a convergence condition of shortemcluster() in C.
* Modified estep() in C.
* Add myiris data set with test and plot.md() in R.
2009-01-11: Ver. 0.1-9
* Add controls for stable solutions in em.EM().
2008-12-03: Ver. 0.1-8
* Fix a bug for likelihood calculations for 1 cluster.
* Fix a bug for determine() using call by address that change the values
of input parameters.
* Fix more bugs in "src/initials.c" for MLE and MME of ltsigma.
2008-11-16: Ver. 0.1-7
* Add sequential boosting methods.
2008-10-29: Ver. 0.1-6
* Add logL(), dmixmvn(), dlmvn() in "R/" and "R_dlmvnorm.c" in "src/".
* Add all functions with wt version to ignore transposing matrix.
* Fix a bug in e.step() in "R/".
* Add GetRNGstate() and PutRNGstate() in "src/srswor.c".
* Add all test functions in "test/" to test wt and wot version.
2008-10-27: Ver. 0.1-5
* Change estep() to e.step(), mstep to m.step() in "R/".
* Create RRand() in "R/".
2008-10-20: Ver. 0.1-4
* In "src/", add "R_estep.c", "R_mstep.c".
* In "R/", add "fcn_estep.r", "fcn_mstep.r".
* In "demo/" , add "testemstep.r".
2008-10-14: Ver. 0.1-3
* In "src/", add "M_emgroup.c", "M_init_other.c", "R_M_emgroup.c",
"R_M_init_other.c", "R_emcluster.c", and "R_initials.c".
* In "R/", add "fcn_init_other.c", "fcn_initials.r", "fcn_plot2d.r",
"fcn_summary.r", and modify all other files.
* In "demo/", add "test_init.r".
* In "data/", add "control.r", "da2.rda", and "da3.rda".
2008-10-06: Ver. 0.1-2
* Add "src/R_tool.c".
* Add "R_emgroup()" in "src/R_emgroup.c" to call "emgroup()"
in "src/emgroup.c".
* Add "R_starts_via_svd()" in "src/R_init_svd.c" to call
"starts_via_svd()" in "src/init_svd.c".
* Add "R/fcnmy.r".
* Add "emgroup()" in "R/fcn_emgroup.r" to call "R_emgroup()"
in "src/R_emgroup.c".
* Add "starts_via_svd()" in "R/fcn_init_svd.r" to call "R_starts_via_svd()"
in "src/R_init_svd.c".
* Add "demo/test_emgroup.r" and "demo/test_starts_via_svd.r".
* Add "data/da1.rda".
2008-09-24: Ver. 0.1-1
* Initial the package "EMCluster".