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hhblits -i /home/sandhyap/2CX7 -d /home/sandhyap/programs/databases/uniclust30_2016_09 -oa3m query1.a3m -n 1
- 14:55:22.971 INFO: Search results will be written to /home/sandhyap/2CX7.hhr
- 14:55:22.971 ERROR: In /home/sandhyap/programs/hh-suite/src/ffindexdatabase.cpp:11: FFindexDatabase:
- 14:55:22.971 ERROR: could not open file '/home/sandhyap/programs/databases/uniclust30_2016_09_cs219.ffdata'
I cheked the permission.
lrwxrwxrwx 1 sandhyap sandhyap 29 Feb 1 2017 uniclust30_2016_09_a3m_db -> uniclust30_2016_09_a3m.ffdata
-rwxrwxrwx 1 sandhyap sandhyap 293264904 Feb 1 2017 uniclust30_2016_09_a3m_db.index
-rwxrwxrwx 1 sandhyap sandhyap 37485951912 Feb 1 2017 uniclust30_2016_09_a3m.ffdata
-rwxrwxrwx 1 sandhyap sandhyap 251739828 Feb 1 2017 uniclust30_2016_09_a3m.ffindex
-rwxrwxrwx 1 sandhyap sandhyap 2879944163 Feb 1 2017 uniclust30_2016_09.cs219
-rwxrwxrwx 1 sandhyap sandhyap 2756317415 Feb 1 2017 uniclust30_2016_09_cs219.ffdata
-rwxrwxrwx 1 sandhyap sandhyap 239706919 Feb 1 2017 uniclust30_2016_09_cs219.ffindex
-rwxrwxrwx 1 sandhyap sandhyap 19 Feb 1 2017 uniclust30_2016_09.cs219.sizes
lrwxrwxrwx 1 sandhyap sandhyap 29 Feb 1 2017 uniclust30_2016_09_hhm_db -> uniclust30_2016_09_hhm.ffdata
-rwxrwxrwx 1 sandhyap sandhyap 5262389 Feb 1 2017 uniclust30_2016_09_hhm_db.index
-rwxrwxrwx 1 sandhyap sandhyap 7922155392 Feb 1 2017 uniclust30_2016_09_hhm.ffdata
-rwxrwxrwx 1 sandhyap sandhyap 4547125 Feb 1 2017 uniclust30_2016_09_hhm.ffindex
-rwxrwxrwx 1 sandhyap sandhyap 767 Feb 1 2017 uniclust30_2016_09_md5sum
AFter that i followed
https://github.com/soedinglab/hh-suite/wiki#why-do-i-get-a-segmentation-fault-when-calling-hhblits-on-our-new-machine
hhblits -i /home/sandhyap/2CX7 -d /home/sandhyap/programs/databases/uniclust30_2016_09 -oa3m query1.a3m -n 1 -cpu 1 -maxmem 1
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 40
On-line CPU(s) list: 0-39
Thread(s) per core: 1
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz
Stepping: 7
CPU MHz: 1989.288
CPU max MHz: 3900.0000
CPU min MHz: 1000.0000
BogoMIPS: 5000.00
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 1024K
L3 cache: 28160K
NUMA node0 CPU(s): 0-19
NUMA node1 CPU(s): 20-39
How can i solve this problem ?
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