Hi, I used colabfold for PPI work but now get error.
cmd: colabfold_batch SY-18_new.fasta SY-18_new_result --num-recycle 3 --model-type alphafold2_multimer_v3
error:
2026-06-30 20:50:56,753 Running on GPU
2026-06-30 20:50:56,841 Found 5 citations for tools or databases
2026-06-30 20:50:56,842 Query 1/28: E120R-_-DP96R (length 218)
2026-06-30 20:51:02,884 Timeout while submitting to MSA server. Retrying...
2026-06-30 20:51:08,915 Timeout while submitting to MSA server. Retrying...
SUBMIT: 0%| | 0/300 [elapsed: 00:12 remaining: ?]SUBMIT: 0%| | 0/300 [elapsed: 00:16 remaining: ?]
Hi, I used colabfold for PPI work but now get error.
cmd: colabfold_batch SY-18_new.fasta SY-18_new_result --num-recycle 3 --model-type alphafold2_multimer_v3
error:
2026-06-30 20:50:56,753 Running on GPU
2026-06-30 20:50:56,841 Found 5 citations for tools or databases
2026-06-30 20:50:56,842 Query 1/28: E120R-_-DP96R (length 218)
2026-06-30 20:51:02,884 Timeout while submitting to MSA server. Retrying...
2026-06-30 20:51:08,915 Timeout while submitting to MSA server. Retrying...
SUBMIT: 0%| | 0/300 [elapsed: 00:12 remaining: ?]SUBMIT: 0%| | 0/300 [elapsed: 00:16 remaining: ?]