[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

src/sourmash/commands.py

@@ -944,7 +944,7 @@ def gather(args):
         databases = [LazyLinearIndex(db) for db in databases]
     elif 1:
         # @CTB foo revindex
-        print('XXX NOTE: using RevIndex for ZipFileLinearIndex')
+        print("XXX NOTE: using RevIndex for ZipFileLinearIndex")
         from sourmash.index.revindex import RevIndex
         from sourmash.index import ZipFileLinearIndex
 

src/sourmash/index/__init__.py

@@ -320,12 +320,13 @@ def counter_gather(self, query, threshold_bp, **kwargs):
             # tada!
             return counter
         else:
-            print('XXX NOTE: Using RevIndex CounterGather')
+            print("XXX NOTE: Using RevIndex CounterGather")
             from .revindex import RevIndex_CounterGather, RevIndex
 
             revindex = RevIndex(template=prefetch_query.minhash)
-            cg = RevIndex_CounterGather(prefetch_query, revindex, threshold_bp,
-                                        allow_insert=True)
+            cg = RevIndex_CounterGather(
+                prefetch_query, revindex, threshold_bp, allow_insert=True
+            )
 
             n_added = 0
             for result in self.prefetch(prefetch_query, threshold_bp, **kwargs):

src/sourmash/index/revindex.py

@@ -67,11 +67,11 @@ def _init_inner(self):
             template_ptr,
         )
 
-        for n, (orig_ss, stored_ss) in enumerate(zip(self._signatures,
-                                                     self.signatures())):
+        for n, (orig_ss, stored_ss) in enumerate(
+            zip(self._signatures, self.signatures())
+        ):
             self._orig_signatures[stored_ss.md5sum()] = orig_ss
 
-
     def signatures(self):
         self._init_inner()
 
@@ -196,9 +196,7 @@ def search(self, query, *args, **kwargs):
             if match.score >= threshold:
                 match_md5 = match.signature.md5sum()
                 orig_ss = self._orig_signatures[match_md5]
-                results.append(
-                    IndexSearchResult(match.score, orig_ss, match.location)
-                )
+                results.append(IndexSearchResult(match.score, orig_ss, match.location))
 
         return results
 

tests/test_sourmash.py

@@ -4281,7 +4281,7 @@ def approx_equal(a, b, n=5):
             # double check -- should match 'search --containment'.
             # (this is kind of useless for a 1.0 contained_by, I guess)
             filename = row["filename"]
-            print('trying load from:', row["filename"])
+            print("trying load from:", row["filename"])
             match = load_one_signature(filename, ksize=21)
             assert match.contained_by(combined_sig) == 1.0