Tiny look of "Fit to height"

[valosekj]

The "Fit to height" option is tiny (and almost impossible to assess):

sct_deepseg lesion_sci_t2 -i sub-001_acq-sag_T2w.nii.gz -qc-plane Sagittal -qc ./qc

SCT version: git-master-ae939b1c3be5f9def829562c82a45cb9dda8dabb

In the past, there was a grid with usually 3 or 4 columns for this type of QC, making it easier to assess.

[valosekj]

Individual QCs generated using sct_qc look fine:

# Spinal cord QC
sct_qc -i ${file}.nii.gz -d ${file}_sc_seg.nii.gz -s ${file}_sc_seg.nii.gz -p sct_deepseg_lesion -plane sagittal -qc ./qc
# Lesion QC
sct_qc -i ${file}.nii.gz -d ${file}_lesion_seg.nii.gz -s ${file}_sc_seg.nii.gz -p sct_deepseg_lesion -plane sagittal -qc ./qc

[elhil]

If I'm understanding correctly, you want an option between "Fit to height" and "Full size"? What does "Full size" look like for this kind of image?

[valosekj]

f I'm understanding correctly, you want an option between "Fit to height" and "Full size"?

Yeah, I believe so.

What does "Full size" look like for this kind of image?

Just a single slice

I'm attaching the QC report:

qc.zip

[joshuacwnewton]

I don't think this is an issue with report-ui (the interface that displays the QC)?

Instead, it looks like the sagittal mosaic example you're sharing is a 1xN mosaic (i.e. only one column). Meaning, there is probably some issue with the QC report generation that is causing a lack of 3-4 columns, and might be worth opening as an issue on SCT instead.