MATseq/.gitignore at main · sqn-bioinformatics/MATseq · GitHub

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#ignore /bin
/bin

#ignore conda-meta
/conda-meta

#ignore all logs
**/logs
logs
**/*.pyc

#ignore config
config.txt

#ignore vscode settings
/.vscode

#ignore snakemake logs
/.snakemake

#ignore pickled model
BaggingClassifier.joblib

#ignore results directory contents
/results/**

#ignore Python cache files
__pycache__/
*.pyc
*.pyo
*.pyd
.Python

#ignore IDE files
.idea/
*.swp
*.swo
*~

#ignore temporary files
*.tmp
*.bak
pipeline_output.log
example.docx

#ignore environment files
.env
.venv
env/
venv/

#ignore data files (except requiring manual download)
/data/go_terms_support/*.obo
/data/go_terms_support/*.gz
/data/go_terms_support/gene2go
/data/raw/

#ignore markdown files
*.md

#ignore claude cache
/.claude

#ignore misc caches
cache/
/cache