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public_highqual.tab
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108 lines (108 loc) · 11.2 KB
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SampleID Strain CONTIG COUNT L50 L90 MAX MEAN MEDIAN MIN N50 N90 TOTAL LENGTH BUSCO_Complete BUSCO_Single BUSCO_Duplicate BUSCO_Fragmented BUSCO_Missing BUSCO_NumGenes
IFM_59359 IFM_59359 2482 150 610 274857 11489.37 1023 500 54339 9253 28516613 95.3 95.2 0.1 2.5 2.2 4046
IFM_61407 IFM_61407 2859 141 649 317166 9922.94 998 492 53240 7324 28369686 95.3 95.2 0.1 2.9 1.8 4046
SRR5676592 MO91298SB 194 19 54 1102163 141608.65 10559 510 532557 132652 27472078 96.3 96.2 0.1 0.3 3.4 4046
DRR022925 IFM_59361-1 602 25 92 1421506 47905.41 1690 502 345799 80075 28839057 96.5 96.4 0.1 0.4 3.1 4046
IFM_59356-2 IFM_59356-2 1446 169 600 228574 19609.19 7434 502 48532 12167 28354883 96.8 96.7 0.1 1.6 1.6 4046
ERR769504 12-7504462 221 17 57 1849455 130725.80 8972 503 507993 156940 28890402 97.1 96.9 0.2 0.4 2.5 4046
SRR617735 F16134 404 33 111 1649255 69160.01 6140 505 272146 70199 27940645 97.1 97.0 0.1 0.3 2.6 4046
DRR022926 IFM_59361-2 563 25 92 1094882 51815.01 1738 500 333849 73169 29171853 97.3 97.2 0.1 0.5 2.2 4046
IFM_59056 IFM_59056 626 67 225 499868 44576.88 12109 500 126240 33223 27905126 97.3 97.2 0.1 0.6 2.1 4046
IFM_59361 IFM_59361 960 69 226 425998 30220.11 1867 500 133652 31415 29011304 97.4 97.2 0.2 0.7 1.9 4046
IFM_61578 IFM_61578 981 102 350 318880 28378.27 7561 500 91098 20343 27839086 97.6 97.5 0.1 1.1 1.3 4046
SRR7418926 CM3249 883 127 411 328925 31022.70 17601 502 64532 20398 27393041 97.6 97.5 0.1 1.1 1.3 4046
SRR617743 F18149 561 51 175 538320 50142.98 7789 508 176138 42145 28130209 97.8 97.7 0.1 0.5 1.7 4046
SRR7418940 TP12 2912 128 506 316950 10550.22 855 500 72774 10309 30722243 97.8 97.7 0.1 1.1 1.1 4046
IFM_55369 IFM_55369 768 85 297 410827 36416.37 12398 500 103211 25694 27967770 97.9 97.8 0.1 0.7 1.4 4046
IFM_58026 IFM_58026 987 134 444 208575 28125.98 13618 500 67344 17906 27760339 97.9 97.9 0.0 1.1 1.0 4046
IFM_59777 IFM_59777 1157 102 369 428150 24819.09 3773 500 78232 19869 28715691 97.9 97.8 0.1 0.9 1.2 4046
SRR7418932 akuBKU80 5228 158 1731 333341 6851.86 1282 500 61768 1906 35821546 97.9 97.8 0.1 0.9 1.2 4046
SRR7418934 CEA10 843 98 344 355619 34338.35 12711 502 91642 22425 28947225 97.9 97.8 0.1 1.0 1.1 4046
SRR7418937 CM6126 960 112 392 344623 29787.88 11649 501 77526 20594 28596364 97.9 97.8 0.1 1.2 0.9 4046
SRR7418939 CM7510 834 115 387 398439 34373.34 18100 510 78979 21226 28667369 97.9 97.8 0.1 1.0 1.1 4046
IFM_59356-1 IFM_59356-1 272 40 122 741767 104469.84 53507 500 235731 70861 28415797 98.0 97.9 0.1 0.6 1.4 4046
SRR7418924 CM2730 639 94 304 293857 42899.58 24767 506 94504 26783 27412832 98.0 97.9 0.1 0.9 1.1 4046
IFM_59355-1 IFM_59355-1 358 47 146 743464 79373.30 31631 513 203554 54788 28415641 98.1 98.0 0.1 0.5 1.4 4046
IFM_59355-2 IFM_59355-2 365 53 162 488479 77841.43 34470 513 177554 47901 28412121 98.1 98.0 0.1 0.6 1.3 4046
SRR7418930 CM2495 675 97 325 271243 39739.75 22824 509 85619 24863 26824331 98.1 98.0 0.1 0.8 1.1 4046
SRR7418933 CM7570 457 65 197 466817 60044.84 28617 506 149373 42290 27440494 98.1 97.9 0.2 0.9 1.0 4046
SRR7418948 CM4946 770 93 303 332679 35802.03 12344 501 95878 25886 27567566 98.1 98.0 0.1 0.9 1.0 4046
SRR7418949 CM5757 670 83 291 496389 42470.63 19297 506 108020 27827 28455323 98.1 98.0 0.1 0.8 1.1 4046
SRR7418923 CM2733 688 95 295 287596 39904.13 20121 504 98668 26599 27454039 98.2 98.1 0.1 0.8 1.0 4046
SRR7418928 CM4602 734 98 325 293117 37394.58 19190 503 88260 24666 27447620 98.2 98.1 0.1 0.9 0.9 4046
SRR7418931 AF293 817 96 313 381330 34866.83 11174 506 95480 24854 28486198 98.2 97.9 0.3 0.9 0.9 4046
SRR7418936 CM6458 770 82 293 387769 37085.92 11244 500 102949 24133 28556157 98.2 98.1 0.1 1.0 0.8 4046
SRR7418941 CM7632 708 84 277 453235 40091.97 13880 502 104430 28203 28385112 98.2 98.1 0.1 0.7 1.1 4046
SRR7418943 ATCC_204305 746 89 303 317162 37206.31 13726 504 100487 26636 27755906 98.2 98.1 0.1 0.9 0.9 4046
SRR7418925 CM7560 602 89 285 440366 45072.92 24999 518 97869 26612 27133896 98.3 98.2 0.1 0.8 0.9 4046
SRR7418929 CM3249b 705 101 319 317997 38621.02 21776 505 82758 26262 27227821 98.3 98.2 0.1 0.8 0.9 4046
SRR7418938 CM7555 561 85 277 407655 51269.84 28706 503 108456 29860 28762381 98.3 98.2 0.1 0.8 0.9 4046
SRR7418945 CM3248 793 87 316 375608 35107.84 13377 500 98858 25172 27840516 98.3 98.2 0.1 0.8 0.9 4046
SRR7418946 TP32 690 97 327 315381 40370.16 22675 506 84505 25447 27855411 98.3 98.2 0.1 0.7 1.0 4046
DRR022927 IFM_60237 688 39 131 636333 42667.46 1961 501 253059 60893 29355211 98.4 98.3 0.1 0.4 1.2 4046
SRR7418942 CM237 1067 101 358 414520 27323.64 5440 500 91912 19605 29154325 98.4 98.2 0.2 0.7 0.9 4046
SRR7418944 CM5419 969 104 370 494542 29690.01 8841 501 81189 20589 28769616 98.4 98.3 0.1 0.9 0.7 4046
SRR7418927 CM3720 701 91 288 374429 39171.53 15394 505 98830 26807 27459240 98.5 98.4 0.1 0.7 0.8 4046
IFM_61610 IFM_61610 725 79 265 459269 38538.31 10794 500 109493 29197 27940272 98.6 98.5 0.1 0.7 0.7 4046
IFM_58029 IFM_58029 813 87 301 294534 34331.33 10808 505 104061 25348 27911368 98.7 98.7 0.0 0.6 0.7 4046
IFM_59356-3 IFM_59356-3 986 109 355 299534 28381.00 7643 500 82432 21824 27983670 98.7 98.6 0.1 0.7 0.6 4046
IFM_62516 IFM_62516 1086 121 400 275378 25825.62 7456 500 71390 19422 28046624 98.7 98.6 0.1 0.6 0.7 4046
IFM_59073 IFM_59073 699 83 269 428082 40207.92 13854 501 104466 29669 28105334 98.8 98.7 0.1 0.6 0.6 4046
IFM_61118 IFM_61118 1035 131 434 246899 26965.89 10872 500 65947 18705 27909700 98.8 98.7 0.1 0.7 0.5 4046
IFM_60514 IFM_60514 615 75 248 623288 45178.54 19264 500 111994 33059 27784800 98.9 98.8 0.1 0.5 0.6 4046
SRR068950 A1163 424 32 105 717521 68124.42 5849 504 272556 73005 28884756 98.9 98.8 0.1 0.5 0.6 4046
SRR5676590 MO79587EXP 225 14 48 2872216 123151.68 5609 502 581791 157388 27709129 99.0 98.9 0.1 0.4 0.6 4046
SRR617725 F12636 335 36 122 994745 85437.56 21894 512 240289 63411 28621583 99.0 98.9 0.1 0.4 0.6 4046
SRR617727 F13619 559 38 134 766966 52021.85 3906 501 224803 49573 29080214 99.0 98.9 0.1 0.4 0.6 4046
SRR617731 F14532 514 43 142 788390 54999.24 5681 507 207638 48379 28269610 99.0 98.9 0.1 0.4 0.6 4046
SRR617733 F15390 584 48 161 644259 48296.50 3946 500 185897 44601 28205154 99.0 98.9 0.1 0.3 0.7 4046
SRR617741 F5211G 309 36 113 798172 92525.37 28811 500 262691 66240 28590339 99.0 98.9 0.1 0.4 0.6 4046
ERR769498 Af293 290 22 68 1700927 98369.32 6299 512 393637 120436 28527104 99.1 99.0 0.1 0.3 0.6 4046
ERR769499 Af65 282 26 76 1100696 102144.67 11449 505 363712 96425 28804798 99.1 99.0 0.1 0.4 0.5 4046
ERR769501 12-7505220 395 19 76 1628102 73273.77 3471 500 452062 83246 28943139 99.1 99.0 0.1 0.4 0.5 4046
ERR769517 Afu_591-12 275 19 68 1622055 102148.44 7225 500 449466 110519 28090820 99.1 99.0 0.1 0.3 0.6 4046
SRR5676588 MO76959EXP 260 21 71 1192584 109368.43 7939 500 444514 112469 28435792 99.1 99.0 0.1 0.4 0.5 4046
SRR5676589 MO69250EXP 233 22 65 1097745 121980.76 7628 500 485895 118424 28421517 99.1 99.0 0.1 0.3 0.6 4046
SRR617720 AF41 393 34 108 727354 70625.10 6195 500 289960 74121 27755666 99.1 99.0 0.1 0.3 0.6 4046
SRR617726 F13535 366 35 118 909984 77604.69 13848 508 243195 65164 28403318 99.1 99.0 0.1 0.3 0.6 4046
SRR617736 F16216 424 39 125 611078 66090.68 7232 502 235526 52493 28022450 99.1 99.0 0.1 0.3 0.6 4046
SRR617737 F16311 267 23 80 1146338 105820.77 9847 502 377897 98792 28254146 99.1 99.0 0.1 0.3 0.6 4046
SRR617738 F17582 387 38 133 782431 72769.71 16756 504 220127 49475 28161876 99.1 99.0 0.1 0.3 0.6 4046
ERR769500 12-7505446 269 22 76 1233380 105539.70 13039 506 422452 90912 28390178 99.2 99.1 0.1 0.3 0.5 4046
ERR769507 08-36-03-25 536 24 85 1333900 54072.35 2259 504 383300 85269 28982780 99.2 99.1 0.1 0.2 0.6 4046
ERR769508 08-31-08-91 279 18 64 1449650 101685.84 4439 503 446515 105524 28370350 99.2 99.1 0.1 0.3 0.5 4046
ERR769512 08-19-02-46 311 20 76 1309679 90919.49 4472 503 404310 110323 28275960 99.2 99.1 0.1 0.3 0.5 4046
ERR769513 08-19-02-10 274 21 67 1320770 101964.75 5704 504 420069 124469 27938341 99.2 99.1 0.1 0.3 0.5 4046
ERR769515 Afu_1042-09 229 20 66 1732743 123406.26 13280 501 445170 114631 28260034 99.2 99.1 0.1 0.3 0.5 4046
ERR769516 Afu_343-P-11 499 24 100 1623155 57857.74 2600 500 418909 63778 28871013 99.2 99.1 0.1 0.3 0.5 4046
ERR769519 Afu_166-E11 265 21 65 1112072 106162.27 6403 501 514625 114472 28133002 99.2 99.1 0.1 0.3 0.5 4046
ERR769521 Afu_218-E11 257 20 67 1720452 109498.45 9488 500 506681 109674 28141101 99.2 99.1 0.1 0.3 0.5 4046
SRR4002444 1F1SW_F4 209 14 50 1942531 133760.00 6029 501 627787 139412 27955841 99.2 99.1 0.1 0.3 0.5 4046
SRR4142832 A1159-T0-2 302 23 71 1630670 92120.69 4103 503 365234 120241 27820449 99.2 99.2 0.0 0.3 0.5 4046
SRR5676587 MO54056EXP 221 25 74 1078860 129762.52 20845 511 404472 109400 28677518 99.2 99.1 0.1 0.3 0.5 4046
SRR5676591 MO78722EXP 199 21 68 1721595 143099.57 36355 504 472253 106488 28476814 99.2 99.1 0.1 0.3 0.5 4046
SRR5676593 MO89263LAB 231 20 63 1109744 122939.47 9404 500 502651 115808 28399017 99.2 99.1 0.1 0.3 0.5 4046
SRR617721 AF72 378 28 95 1006320 73414.57 4649 501 321171 77693 27750706 99.2 99.1 0.1 0.3 0.5 4046
SRR617722 AF90 273 27 92 1052378 102691.61 19027 535 339836 82973 28034809 99.2 99.1 0.1 0.3 0.5 4046
SRR617723 F12041 387 35 116 729743 73409.63 9122 503 253935 71268 28409526 99.2 99.1 0.1 0.4 0.4 4046
SRR617728 F13952 407 36 122 909985 69742.51 10157 504 229302 59658 28385202 99.2 99.1 0.1 0.3 0.5 4046
SRR617730 F14513G 392 34 118 909973 72452.53 10742 506 247216 62585 28401393 99.2 99.1 0.1 0.3 0.5 4046
SRR617732 F14946G 220 22 70 1146057 127991.08 19003 505 419130 117172 28158038 99.2 99.1 0.1 0.3 0.5 4046
SRR617739 F17729 277 28 87 1193303 101556.13 13663 509 366284 89295 28131049 99.2 99.1 0.1 0.3 0.5 4046
SRR617740 F17729W 318 33 101 700558 88362.62 12843 506 286237 82644 28099314 99.2 99.1 0.1 0.3 0.5 4046
SRR617742 F18085 311 24 82 1247749 90792.84 7088 505 406755 78768 28236574 99.2 99.1 0.1 0.4 0.4 4046
SRR617745 F17764 399 33 109 1170555 69551.76 4821 502 279793 70554 27751154 99.2 99.1 0.1 0.3 0.5 4046
ERR769503 12-7504652 290 19 62 1135399 96273.60 4444 503 507424 119081 27919344 99.3 99.2 0.1 0.2 0.5 4046
ERR769505 12-7505054 269 22 69 1049293 104597.29 10005 501 416291 100574 28136671 99.3 99.2 0.1 0.3 0.4 4046
ERR769506 08-12-12-13 284 22 67 1019797 98625.79 6459 500 465633 105503 28009725 99.3 99.2 0.1 0.2 0.5 4046
ERR769509 08-19-02-61 255 22 71 1355876 111090.56 10091 502 427632 100588 28328094 99.3 99.2 0.1 0.2 0.5 4046
ERR769510 08-19-02-30 243 18 60 1409676 116725.15 7268 500 507403 126874 28364212 99.3 99.2 0.1 0.3 0.4 4046
ERR769511 10-01-02-27 268 22 66 1024105 106222.90 6289 500 447757 128266 28467737 99.3 99.2 0.1 0.3 0.4 4046
ERR769514 Afu_942-09 231 19 65 1249977 122065.77 16218 500 449466 110518 28197192 99.3 99.2 0.1 0.3 0.4 4046
ERR769518 Afu_124-E11 256 21 71 1187714 109947.94 9701 500 436631 108472 28146672 99.3 99.2 0.1 0.2 0.5 4046
ERR769520 Afu_257-E11 242 19 67 1577607 116347.81 11154 500 446932 108472 28156171 99.3 99.2 0.1 0.3 0.4 4046
SRR4002443 ISSF_21 146 14 43 2292047 193985.22 22108 525 668216 190385 28321842 99.3 99.2 0.1 0.2 0.5 4046
SRR4142436 A1159 324 25 77 1272604 85649.19 3208 502 364706 98236 27750338 99.3 99.2 0.1 0.2 0.5 4046
SRR5676586 MO68507EXP 365 26 75 1148719 78433.39 3448 507 413501 110763 28628187 99.3 99.2 0.1 0.3 0.4 4046
SRR617724 F12219 278 31 90 869080 100083.38 12085 505 317058 90956 27823179 99.3 99.2 0.1 0.2 0.5 4046
SRR617729 F14403 256 24 79 1400692 110350.75 12714 504 380962 94913 28249792 99.4 99.3 0.1 0.2 0.4 4046