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incorrect update to old files
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diamond-maze-behavior/getdefaultdirectorieshpcpfcinteractions.m

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%% directories to get data from
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dirs.virmenephysdatadir = '\\neuro-cloud\labs\singer\Steph\VirmenEphysData\';
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dirs.virmendatadir = '\\neuro-cloud\labs\singer\Virmen Logs\DiamondMaze\';
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dirs.processeddatadir = '\\neuro-cloud\labs\singer\ProcessedData\VR_AnnularTrack\';
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dirs.processeddatadir = '\\neuro-cloud\labs\singer\ProcessedData\VR_AlternationTask\';
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dirs.spreadsheetdir = '\\neuro-cloud.ad.gatech.edu\labs\singer\Steph\Code\spreadsheets\VRDiamondTrack.xlsx';
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dirs.behaviorspreadsheetdir = '\\neuro-cloud.ad.gatech.edu\labs\singer\Steph\Code\spreadsheets\ContinuousAlternationTrackSummary.xlsx';
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dirs.behaviorspreadsheetdir = '\\neuro-cloud.ad.gatech.edu\labs\singer\Steph\Code\spreadsheets\VisualGuidedContinuousAltTrackSummary.xlsx';

diamond-maze-behavior/plotDiamondTrackCorrectPerformance.m

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plotDiamondTrackMetricsBySession(trackdata,animal,track,dirs,plotInfo,'perCorrect');
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plotDiamondTrackMetricsBySession(trackdata,animal,track,dirs,plotInfo,'perIncorrect');
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plotDiamondTrackMetricsBySession(trackdata,animal,track,dirs,plotInfo,'numCorrect');
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plotDiamondTrackMetricsBySession(trackdata,animal,track,dirs,plotInfo,'numTrials');
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%plotDiamondTrackMetricsBySession(trackdata,animal,track,dirs,plotInfo,'numTrials');
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%% plot number correct trials for each session
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% fieldsToPlot = find(~cellfun(@isempty,strfind(fnames,'numTrials'))); %finds all the fieldname indices in the data structure that match

script_hpcpfcinteractions.m

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% this script will generate all the analyses for the hpc-pfc diamond maze analyses
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%% sets up animals, dates, directories
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animals = [7,8,9,10];
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animals = [9,10];
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excldates = []; incldates = [];
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%gets data directories and indices
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dirs = getdefaultdirectorieshpcpfcinteractions;
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indices = getdefaultindiceshpcpfcinteractions(animals,dirs,excldates,incldates);
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%set flags for what you want to do
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makenewfiles = 1; % this flag generates new data structures, when set to 0 it uses preexisting data structures
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makenewfiles = 0; % this flag generates new data structures, when set to 0 it uses preexisting data structures
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behavior = 1;
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%% perform behavioral analyses

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