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rebuild vignettes (#100)
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‎man/figures/rgdrid/rgd_id-1.png‎

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‎man/figures/rgdrid/rid_plot-1.png‎

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‎vignettes/idsa.Rmd‎

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@@ -66,7 +66,7 @@ idsa.model = idsa(Depression_prevelence ~ .,
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data = depression,
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wt = wt, cores = 12)
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tictoc::toc()
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## 87 sec elapsed
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## 82.64 sec elapsed
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idsa.model
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## *** Interactive Detector For Spatial Associations
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##

‎vignettes/opgd.Rmd‎

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@@ -39,7 +39,7 @@ g = gd_optunidisc(NDVIchange ~ .,
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data = dplyr::select(ndvi,-c(Climatezone,Mining)),
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discnum = 3:15, cores = 6)
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tictoc::toc()
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## 3.32 sec elapsed
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## 4.05 sec elapsed
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```
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‎vignettes/rgdrid.Rmd‎

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``` r
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names(ndvi)
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## [1] "NDVIchange" "Climatezone" "Mining" "Tempchange"
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## [5] "Precipitation" "GDP" "Popdensity"
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## [1] "NDVIchange" "Climatezone" "Mining" "Tempchange" "Precipitation"
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## [6] "GDP" "Popdensity"
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```
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### Run RGD
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## | Precipitation | 0.8883955 | 4.77e-10 |
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## | Climatezone | 0.8218335 | 7.34e-10 |
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## | Tempchange | 0.3722571 | 3.22e-10 |
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## | Popdensity | 0.2193538 | 9.31e-10 |
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## | Popdensity | 0.2205321 | 9.65e-10 |
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## | Mining | 0.1411154 | 6.73e-10 |
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## | GDP | 0.1406153 | 4.86e-10 |
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## | GDP | 0.1164814 | 1.08e-10 |
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plot(ndvi_rgd)
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```
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‎vignettes/sesu.Rmd‎

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@@ -27,7 +27,7 @@ fvcpath = "https://github.com/SpatLyu/rdevdata/raw/main/FVC.tif"
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fvc = terra::rast(paste0("/vsicurl/",fvcpath))
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fvc
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## class : SpatRaster
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## dimensions : 418, 568, 13 (nrow, ncol, nlyr)
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## size : 418, 568, 13 (nrow, ncol, nlyr)
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## resolution : 1000, 1000 (x, y)
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## extent : -92742.16, 475257.8, 3591385, 4009385 (xmin, xmax, ymin, ymax)
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## coord. ref. : Asia_North_Albers_Equal_Area_Conic

‎vignettes/shegd.Rmd‎

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``` r
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lesh.m$interaction
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## # A tibble: 15 × 8
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## variable1 variable2 Interaction Variable1 Q-statisti…¹ Variable2 Q-statisti…²
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## <chr> <chr> <chr> <dbl> <dbl>
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## 1 Climatezone Mining Weaken, un… 0.821 0.140
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## 2 Climatezone Tempchan… Weaken, un… 0.821 0.333
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## 3 Climatezone Precipit… Enhance, b… 0.821 0.873
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## 4 Climatezone GDP Enhance, b… 0.821 0.0917
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## 5 Climatezone Popdensi… Enhance, b… 0.821 0.223
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## 6 Mining Tempchan… Enhance, b… 0.140 0.333
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## 7 Mining Precipit… Weaken, un… 0.140 0.873
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## 8 Mining GDP Enhance, b… 0.140 0.0917
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## 9 Mining Popdensi… Enhance, b… 0.140 0.223
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## 10 Tempchange Precipit… Enhance, b… 0.333 0.873
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## 11 Tempchange GDP Enhance, n… 0.333 0.0917
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## 12 Tempchange Popdensi… Enhance, b… 0.333 0.223
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## 13 Precipitati… GDP Enhance, b… 0.873 0.0917
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## 14 Precipitati… Popdensi… Enhance, b… 0.873 0.223
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## 15 GDP Popdensi… Weaken, un… 0.0917 0.223
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## # A tibble: 15 × 11
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## variable1 variable2 Interaction Variable1 Q-statisti…¹ Variable2 Q-statisti…²
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## <chr> <chr> <chr> <dbl> <dbl>
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## 1 Climatezone Mining Weaken, uni- 0.821 0.140
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## 2 Climatezone Tempchange Weaken, uni- 0.821 0.333
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## 3 Climatezone Precipitation Enhance, bi- 0.821 0.873
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## 4 Climatezone GDP Enhance, bi- 0.821 0.0917
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## 5 Climatezone Popdensity Enhance, bi- 0.821 0.223
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## 6 Mining Tempchange Enhance, bi- 0.140 0.333
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## 7 Mining Precipitation Weaken, uni- 0.140 0.873
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## 8 Mining GDP Enhance, bi- 0.140 0.0917
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## 9 Mining Popdensity Enhance, bi- 0.140 0.223
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## 10 Tempchange Precipitation Enhance, bi- 0.333 0.873
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## 11 Tempchange GDP Enhance, nonlinear 0.333 0.0917
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## 12 Tempchange Popdensity Enhance, bi- 0.333 0.223
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## 13 Precipitation GDP Enhance, bi- 0.873 0.0917
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## 14 Precipitation Popdensity Enhance, bi- 0.873 0.223
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## 15 GDP Popdensity Weaken, uni- 0.0917 0.223
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## # ℹ abbreviated names: ¹​`Variable1 Q-statistics`, ²​`Variable2 Q-statistics`
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## # ℹ 3 more variables: `Variable1 and Variable2 interact Q-statistics` <dbl>,
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## # `Variable1 SPD` <dbl>, `Variable2 SPD` <dbl>
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## # ℹ 6 more variables: `Variable1 and Variable2 interact Q-statistics` <dbl>,
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## # `Variable1 P-value` <dbl>, `Variable2 P-value` <dbl>,
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## # `Variable1 and Variable2 interact P-value` <dbl>, `Variable1 SPD` <dbl>,
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## # `Variable2 SPD` <dbl>
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```
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Use `lesh.m$spd_lesh` to access the SHAP power of determinants:

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