Merge pull request #285 from styx-api/fix/ants-fslmath

Fix antsRegistration initial-moving-transform bracket syntax, add Set…

Author: nx10

src/niwrap/ants/2.5.3/SetDirectionByMatrix/app.json

@@ -1,3 +1,10 @@
 {
-  "name": "SetDirectionByMatrix"
+  "name": "SetDirectionByMatrix",
+  "source": {
+    "type": "boutiques",
+    "path": "boutiques.json"
+  },
+  "docs": {
+    "description": "Sets the direction matrix of an image. The direction matrix values are provided as space-separated floating-point numbers in row-major order."
+  }
 }

src/niwrap/ants/2.5.3/SetDirectionByMatrix/boutiques.json

@@ -0,0 +1,43 @@
+{
+  "name": "SetDirectionByMatrix",
+  "command-line": "SetDirectionByMatrix [INFILE] [OUTFILE] [DIRECTION_MATRIX]",
+  "author": "ANTs Developers",
+  "description": "Sets the direction matrix of an image. The direction matrix values are provided as space-separated floating-point numbers in row-major order (e.g. d00 d01 d02 d10 d11 d12 d20 d21 d22 for a 3D image).",
+  "url": "https://github.com/ANTsX/ANTs",
+  "schema-version": "0.5+styx",
+  "inputs": [
+    {
+      "id": "infile",
+      "name": "Input file",
+      "value-key": "[INFILE]",
+      "type": "File",
+      "optional": false,
+      "description": "The input image file."
+    },
+    {
+      "id": "outfile",
+      "name": "Output file",
+      "value-key": "[OUTFILE]",
+      "type": "String",
+      "optional": false,
+      "description": "The output image file."
+    },
+    {
+      "id": "direction_matrix",
+      "name": "Direction matrix",
+      "value-key": "[DIRECTION_MATRIX]",
+      "type": "Number",
+      "list": true,
+      "optional": false,
+      "description": "Direction matrix values in row-major order. For a 2D image provide 4 values (d00 d01 d10 d11), for 3D provide 9 values (d00 d01 d02 d10 d11 d12 d20 d21 d22), for 4D provide 16 values."
+    }
+  ],
+  "output-files": [
+    {
+      "id": "outfile",
+      "name": "Output file",
+      "description": "The output image with the new direction matrix applied.",
+      "path-template": "[OUTFILE]"
+    }
+  ]
+}

src/niwrap/ants/2.5.3/antsRegistration/boutiques.json

@@ -181,7 +181,7 @@
         {
           "id": "initial_moving_transform_use_inverse",
           "name": "Initial moving transform",
-          "command-line": "[INITIAL_MOVING_TRANSFORM][USE_INVERSE]",
+          "command-line": "[[INITIAL_MOVING_TRANSFORM][USE_INVERSE]]",
           "inputs": [
             {
               "id": "initial_moving_transform",

src/niwrap/fsl/6.0.4/fslmaths/boutiques.json

@@ -82,8 +82,37 @@
               "value-key": "[OP_MUL]",
               "id": "mul",
               "name": "Multiply",
-              "type": "Number",
-              "description": "Multiply current image by following input",
+              "type": [
+                {
+                  "id": "mul_value",
+                  "name": "Multiply by value",
+                  "command-line": "[MUL_VALUE]",
+                  "inputs": [
+                    {
+                      "id": "value",
+                      "name": "Value",
+                      "value-key": "[MUL_VALUE]",
+                      "type": "Number",
+                      "optional": false
+                    }
+                  ]
+                },
+                {
+                  "id": "mul_image",
+                  "name": "Multiply by image",
+                  "command-line": "[MUL_IMAGE]",
+                  "inputs": [
+                    {
+                      "id": "image",
+                      "name": "Image",
+                      "value-key": "[MUL_IMAGE]",
+                      "type": "File",
+                      "optional": false
+                    }
+                  ]
+                }
+              ],
+              "description": "Multiply current image by following input (a number or an image)",
               "optional": false,
               "command-line-flag": "-mul"
             }