|
839 | 839 | "id": "operation_kernel_3D", |
840 | 840 | "name": "3D kernel", |
841 | 841 | "description": "3x3x3 box centered on target voxel (set as default kernel)", |
842 | | - "command-line": "[OP_KERNEL_3D]", |
843 | | - "inputs": [ |
844 | | - { |
845 | | - "value-key": "[OP_KERNEL_3D]", |
846 | | - "id": "kernel_3D", |
847 | | - "name": "3D kernel", |
848 | | - "type": "Flag", |
849 | | - "description": "3x3x3 box centered on target voxel (set as default kernel)", |
850 | | - "command-line-flag": "-kernel 3D" |
851 | | - } |
852 | | - ] |
| 842 | + "command-line": "-kernel 3D", |
| 843 | + "inputs": [] |
853 | 844 | }, |
854 | 845 | { |
855 | 846 | "id": "operation_kernel_2D", |
856 | 847 | "name": "2D kernel", |
857 | 848 | "description": "3x3x1 box centered on target voxel", |
858 | | - "command-line": "[OP_KERNEL_2D]", |
859 | | - "inputs": [ |
860 | | - { |
861 | | - "value-key": "[OP_KERNEL_2D]", |
862 | | - "id": "kernel_2D", |
863 | | - "name": "2D kernel", |
864 | | - "type": "Flag", |
865 | | - "description": "3x3x1 box centered on target voxel", |
866 | | - "command-line-flag": "-kernel 2D" |
867 | | - } |
868 | | - ] |
| 849 | + "command-line": "-kernel 2D", |
| 850 | + "inputs": [] |
869 | 851 | }, |
870 | 852 | { |
871 | 853 | "id": "operation_kernel_box", |
872 | 854 | "name": "Box kernel", |
873 | 855 | "description": "All voxels in a cube of width <size> mm centered on target voxel", |
874 | | - "command-line": "[OP_KERNEL_BOX]", |
| 856 | + "command-line": "-kernel box [OP_KERNEL_BOX]", |
875 | 857 | "inputs": [ |
876 | 858 | { |
877 | 859 | "value-key": "[OP_KERNEL_BOX]", |
878 | 860 | "id": "kernel_box", |
879 | 861 | "name": "Box kernel", |
880 | 862 | "type": "Number", |
881 | 863 | "description": "All voxels in a cube of width <size> mm centered on target voxel", |
882 | | - "optional": false, |
883 | | - "command-line-flag": "-kernel box" |
| 864 | + "optional": false |
884 | 865 | } |
885 | 866 | ] |
886 | 867 | }, |
887 | 868 | { |
888 | 869 | "id": "operation_kernel_boxv", |
889 | 870 | "name": "Box kernel (voxels)", |
890 | 871 | "description": "All voxels in a cube of width <size> voxels centered on target voxel", |
891 | | - "command-line": "[OP_KERNEL_BOXV]", |
| 872 | + "command-line": "-kernel boxv [OP_KERNEL_BOXV]", |
892 | 873 | "inputs": [ |
893 | 874 | { |
894 | 875 | "value-key": "[OP_KERNEL_BOXV]", |
895 | 876 | "id": "kernel_boxv", |
896 | 877 | "name": "Box kernel (voxels)", |
897 | 878 | "type": "Number", |
898 | 879 | "description": "All voxels in a cube of width <size> voxels centered on target voxel", |
899 | | - "optional": false, |
900 | | - "command-line-flag": "-kernel boxv" |
| 880 | + "optional": false |
901 | 881 | } |
902 | 882 | ] |
903 | 883 | }, |
904 | 884 | { |
905 | 885 | "id": "operation_kernel_boxv3", |
906 | 886 | "name": "Box kernel (3D voxels)", |
907 | 887 | "description": "All voxels in a cuboid of dimensions X x Y x Z centered on target voxel", |
908 | | - "command-line": "[OP_KERNEL_BOXV3]", |
| 888 | + "command-line": "-kernel boxv3 [OP_KERNEL_BOXV3]", |
909 | 889 | "inputs": [ |
910 | 890 | { |
911 | 891 | "value-key": "[OP_KERNEL_BOXV3]", |
|
916 | 896 | "min-list-entries": 3, |
917 | 897 | "max-list-entries": 3, |
918 | 898 | "description": "All voxels in a cuboid of dimensions X x Y x Z centered on target voxel", |
919 | | - "optional": false, |
920 | | - "command-line-flag": "-kernel boxv3" |
| 899 | + "optional": false |
921 | 900 | } |
922 | 901 | ] |
923 | 902 | }, |
924 | 903 | { |
925 | 904 | "id": "operation_kernel_gauss", |
926 | 905 | "name": "Gaussian kernel", |
927 | 906 | "description": "Gaussian kernel (sigma in mm, not voxels)", |
928 | | - "command-line": "[OP_KERNEL_GAUSS]", |
| 907 | + "command-line": "-kernel gauss [OP_KERNEL_GAUSS]", |
929 | 908 | "inputs": [ |
930 | 909 | { |
931 | 910 | "value-key": "[OP_KERNEL_GAUSS]", |
932 | 911 | "id": "kernel_gauss", |
933 | 912 | "name": "Gaussian kernel", |
934 | 913 | "type": "Number", |
935 | 914 | "description": "Gaussian kernel (sigma in mm, not voxels)", |
936 | | - "optional": false, |
937 | | - "command-line-flag": "-kernel gauss" |
| 915 | + "optional": false |
938 | 916 | } |
939 | 917 | ] |
940 | 918 | }, |
941 | 919 | { |
942 | 920 | "id": "operation_kernel_sphere", |
943 | 921 | "name": "Sphere kernel", |
944 | 922 | "description": "All voxels in a sphere of radius <size> mm centered on target voxel", |
945 | | - "command-line": "[OP_KERNEL_SPHERE]", |
| 923 | + "command-line": "-kernel sphere [OP_KERNEL_SPHERE]", |
946 | 924 | "inputs": [ |
947 | 925 | { |
948 | 926 | "value-key": "[OP_KERNEL_SPHERE]", |
949 | 927 | "id": "kernel_sphere", |
950 | 928 | "name": "Sphere kernel", |
951 | 929 | "type": "Number", |
952 | 930 | "description": "All voxels in a sphere of radius <size> mm centered on target voxel", |
953 | | - "optional": false, |
954 | | - "command-line-flag": "-kernel sphere" |
| 931 | + "optional": false |
955 | 932 | } |
956 | 933 | ] |
957 | 934 | }, |
958 | 935 | { |
959 | 936 | "id": "operation_kernel_file", |
960 | 937 | "name": "External file kernel", |
961 | 938 | "description": "Use external file as kernel", |
962 | | - "command-line": "[OP_KERNEL_FILE]", |
| 939 | + "command-line": "-kernel file [OP_KERNEL_FILE]", |
963 | 940 | "inputs": [ |
964 | 941 | { |
965 | 942 | "value-key": "[OP_KERNEL_FILE]", |
966 | 943 | "id": "kernel_file", |
967 | 944 | "name": "External file kernel", |
968 | 945 | "type": "File", |
969 | 946 | "description": "Use external file as kernel", |
970 | | - "optional": false, |
971 | | - "command-line-flag": "-kernel file" |
| 947 | + "optional": false |
972 | 948 | } |
973 | 949 | ] |
974 | 950 | }, |
|
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