Merge branch 'main' of https://github.com/childmindresearch/styxsingularity

Author: nx10

.github/workflows/publish-pypi.yaml

@@ -12,7 +12,6 @@ jobs:
   pypi-release:
     name: PyPi Release
     runs-on: ubuntu-latest
-
     steps:
     - uses: actions/checkout@v4
 

.github/workflows/test.yaml

@@ -20,6 +20,7 @@ jobs:
     - name: Run tests
       id: run-tests
       run: >
+        uv run --frozen pytest \
         uv run --frozen pytest \
           --junitxml=pytest.xml \
           --cov-report=term-missing:skip-covered \
@@ -28,6 +29,7 @@ jobs:
           --log-level=DEBUG \
           --verbose
 
+
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v5
       with:
@@ -47,8 +49,11 @@ jobs:
     - name: Ruff format
       run: uv run ruff format --check
 
+      run: uv run ruff format --check
+
     - name: Ruff check
       run: uv run ruff check
+      run: uv run ruff check
 
   mypy:
     runs-on: ubuntu-latest

pyproject.toml

@@ -1,4 +1,5 @@
 [project]
+[project]
 name = "styxsingularity"
 version = "0.5.1"
 description = "Singularity/Apptainer integration for Styx compiled wrappers"
@@ -24,6 +25,8 @@ docs = ["pdoc>=15.0.0"]
 [tool.pytest.ini_options]
 pythonpath = ["src"]
 testpaths = ["tests"]
+pythonpath = ["src"]
+testpaths = ["tests"]
 
 [tool.mypy]
 ignore_missing_imports = true