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Skip decontam for test
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.tests/e2e/test_full_run.py

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@@ -60,6 +60,9 @@ def run_sunbeam(setup):
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"all_coverage",
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"--directory",
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tmp_path,
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"--skip",
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"decontam",
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"--show-failed-logs",
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],
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capture_output=True,
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text=True,

scripts/get_coverage.py

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@@ -1,5 +1,5 @@
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"""
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Summarize stats for coverage data for each sample
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Summarize stats for coverage data for each sample
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"""
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import csv

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