Bump version to 5.0.4

Author: Ulthran

.github/workflows/publish.yml

@@ -20,7 +20,119 @@ jobs:
             - run-tests
             - run-integration-tests
 
-    release:
-      uses: ./.github/workflows/release.yml
-      secrets: inherit
-      needs: run-build
+    publish-to-pypi:
+      name: >-
+        Publish Python 🐍 distribution 📦 to PyPI
+      if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+      runs-on: ubuntu-latest
+      environment:
+        name: pypi
+        url: https://pypi.org/p/sunbeamlib
+      permissions:
+        id-token: write  # IMPORTANT: mandatory for trusted publishing
+      needs: run-build  
+
+      steps:
+        - name: Download all the dists
+          uses: actions/download-artifact@v4
+          with:
+            name: python-package-distributions
+            path: dist/
+        - name: Publish distribution 📦 to PyPI
+          uses: pypa/gh-action-pypi-publish@release/v1
+
+    publish-to-dockerhub:
+      name: >-
+        Publish Docker 🐳 image 📦 to Docker Hub
+      if: startsWith(github.ref, 'refs/tags/')  # only publish to Docker Hub on tag pushes
+      runs-on: ubuntu-latest
+      needs: run-build
+
+      steps:
+        - uses: actions/checkout@v4
+
+        - name: Log in to Docker Hub
+          uses: docker/login-action@v3
+          with:
+            username: ${{ secrets.DOCKERHUB_USERNAME }}
+            password: ${{ secrets.DOCKERHUB_TOKEN }}
+
+        - name: Extract Docker metadata
+          id: meta
+          uses: docker/metadata-action@v5
+          with:
+            images: sunbeamlabs/sunbeam
+
+        - name: Build and push full image
+          uses: docker/build-push-action@v6
+          with:
+            context: .
+            file: ./Dockerfile
+            push: true
+            tags: |
+              sunbeamlabs/sunbeam:latest
+              sunbeamlabs/sunbeam:${{ github.ref_name }}
+            labels: ${{ steps.meta.outputs.labels }}
+
+        - name: Build and push slim image
+          uses: docker/build-push-action@v6
+          with:
+            context: .
+            file: ./slim.Dockerfile
+            push: true
+            tags: sunbeamlabs/sunbeam:${{ github.ref_name }}-slim
+            labels: ${{ steps.meta.outputs.labels }}
+
+        - name: Extract cutadapt Docker metadata
+          id: meta-cutadapt
+          uses: docker/metadata-action@v5
+          with:
+            images: sunbeamlabs/cutadapt
+            tags: |
+              sunbeamlabs/cutadapt:${{ github.ref_name }}
+              sunbeamlabs/cutadapt:latest
+
+        - name: Build and push cutadapt image
+          uses: docker/build-push-action@v6
+          with:
+            context: .
+            file: sunbeam/workflow/envs/cutadapt.Dockerfile
+            push: true
+            tags: ${{ steps.meta-cutadapt.outputs.tags }}
+            labels: ${{ steps.meta-cutadapt.outputs.labels }}
+
+        - name: Extract komplexity Docker metadata
+          id: meta-komplexity
+          uses: docker/metadata-action@v5
+          with:
+            images: sunbeamlabs/komplexity
+            tags: |
+              sunbeamlabs/komplexity:${{ github.ref_name }}
+              sunbeamlabs/komplexity:latest
+
+        - name: Build and push komplexity image
+          uses: docker/build-push-action@v6
+          with:
+            context: .
+            file: sunbeam/workflow/envs/komplexity.Dockerfile
+            push: true
+            tags: ${{ steps.meta-komplexity.outputs.tags }}
+            labels: ${{ steps.meta-komplexity.outputs.labels }}
+
+        - name: Extract QC Docker metadata
+          id: meta-qc
+          uses: docker/metadata-action@v5
+          with:
+            images: sunbeamlabs/qc
+            tags: |
+              sunbeamlabs/qc:${{ github.ref_name }}
+              sunbeamlabs/qc:latest
+
+        - name: Build and push QC image
+          uses: docker/build-push-action@v6
+          with:
+            context: .
+            file: sunbeam/workflow/envs/qc.Dockerfile
+            push: true
+            tags: ${{ steps.meta-qc.outputs.tags }}
+            labels: ${{ steps.meta-qc.outputs.labels }}

.github/workflows/release.yml

@@ -2,7 +2,7 @@
 from pathlib import Path
 
 
-__version__ = "5.0.3"
+__version__ = "5.0.4"
 __author__ = "Erik Clarke"
 __license__ = "GPL2+"