Skip to content

Commit d607597

Browse files
committed
Remove env pins and update docs
1 parent a148477 commit d607597

6 files changed

+2
-184
lines changed

docs/structure.rst

+1-1
Original file line numberDiff line numberDiff line change
@@ -31,7 +31,7 @@ workflow/envs/
3131
-----
3232
This directory contains ``.yml`` files defining environments that will be managed by snakemake as it runs. Anywhere that a rule is defined with ``conda: /path/to/ENV_NAME.yml``, when snakemake reaches that rule, that environment will be created if it doesn't exist already and then activated while running the rule. These environments are created in ``sunbeam/.snakemake/`` by default.
3333

34-
The accompanying files named something like ``ENV_NAME.ARCH.pin.txt`` are generated with ``snakedeploy``. They list all the packages and exact versions in a given environment (for the architecture they were generated on, e.g. linux-64) so that snakemake can first try to use that exact environment and only if it fails, try to solve the ``.yml`` file for itself.
34+
There may be accompanying files named something like ``ENV_NAME.ARCH.pin.txt`` which are generated with ``snakedeploy``. They list all the packages and exact versions in a given environment (for the architecture they were generated on, e.g. linux-64) so that snakemake can first try to use that exact environment and only if it fails, try to solve the ``.yml`` file for itself.
3535

3636
extensions/
3737
-----------

workflow/envs/cutadapt.linux-64.pin.txt

-30
This file was deleted.

workflow/envs/cutadapt.yml

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
channels:
2+
- conda-forge
23
- bioconda
34
dependencies:
45
- cutadapt
5-
#- python =3.12.0
66
name: cutadapt

workflow/envs/komplexity.linux-64.pin.txt

-28
This file was deleted.

workflow/envs/qc.linux-64.pin.txt

-83
This file was deleted.

0 commit comments

Comments
 (0)