Update misc.jl

Argument reindex added to make_edge_label

Author: sungsik-kong

src/misc.jl

@@ -278,13 +278,17 @@ This function is only used for pretty plotting of the network with PhyloPlots.
    - `false`: Excludes terminal edges, hybrid edges with one leaf descendant, 
                 and terminal edges with parent the root.  
    - `true`: Includes all edges.  
+- `reindex` : A boolean flag (default = `true`) that reindexes the edge numbers consecutively.
 
 ## Returns
 - A `DataFrame` with columns:
   - `number`: Edge numbers.
   - `label`: Corresponding symbolic labels (`"t1, γ = g1"`).
 """
-function make_edge_label(net::PhyloNetworks.HybridNetwork; showAllEdgeLabels::Bool=false)
+function make_edge_label(network::PhyloNetworks.HybridNetwork; showAllEdgeLabels::Bool=false, reindex::Bool=true)
+
+   net=deepcopy(network)
+   if(reindex) reindex_edges(net) end
 
   # get internal edge numbers unless want all edges labeled
   edge_numbers_to_include = [e.number for e in net.edge if !PhyloNetworks.getchild(e).leaf || showAllEdgeLabels]