@@ -2803,29 +2803,26 @@ Below is a diagram of the interactions between the wrapper commands in the four
28032803
280428041 . Setting up batchtools
28052805^^^^^^^^^^^^^^^^^^^^^^^^
2806- Beyond the necessary dependency installations for NetPyNE and NEURON , the following `pip` installations are preferred.
2807-
2808- The NetPyNE installation should be handled as a development installation to allow for up to date fixes
2806+ Beyond the necessary installation of NetPyNE and NEURON , the following `pip` installations are required:
28092807
28102808.. code- block::
28112809
2812- git clone https:// github.com/ Neurosim- lab/ netpyne.git
2813- cd netpyne
2814- pip install - e .
2810+ pip install - U ray
2811+ pip install - U batchtk
28152812
2816- A development install of the batchtools subpackage
2813+ `` batchtk`` is the NetPyNE `` batchtools`` subpackage, and `` ray`` is the Ray Tune package, a dependency for batchtools.
2814+
2815+ To allow for up to date fixes of these packages, NetPyNE and batchtk should be set up as development installations:
28172816
28182817.. code- block::
28192818
2820- git clone https:// github.com/ jchen6727 / batchtk .git
2821- cd batchtk
2819+ git clone https:// github.com/ suny - downstate - medical - center / netpyne .git
2820+ cd netpyne
28222821 pip install - e .
28232822
2824- Ray is a dependency for batchtools, and should be installed with the following command
2825-
2826- .. code- block::
2827-
2828- pip install - U ray[default]
2823+ git clone https:// github.com/ suny- downstate- medical- center/ batchtk.git
2824+ cd batchtk
2825+ pip install - e .
28292826
28302827You can validate that the correct packages are installed by checking the `` sim.send`` and `` cfg.update`` methods in an interactive python instance
28312828
@@ -2848,7 +2845,7 @@ You can validate that the correct packages are installed by checking the ``sim.s
28482845 Help on method update in module netpyne.batchtools.runners:
28492846 ...
28502847
2851- If there is an issue with installation, the following message will be presented instead when calling help on either function
2848+ If there is an issue with the installation, the following message will be presented instead when calling help on either function
28522849
28532850.. code- block::
28542851
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