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1. app-ashs-segment app-ashs-segment Public

   brainlife.io app for using Automated Segmentation of Hippocampal Subfields (ASHS) software to segment hippocampal subfields based on previously acquired atlases

   Shell

2. app-denoise-tensorflow app-denoise-tensorflow Public

   Forked from brainlife/app-denoise-tensorflow

   Python

3. app-hcp-acpc-alignment app-hcp-acpc-alignment Public

   Forked from brainlife/app-hcp-acpc-alignment

   This app will align a T1w image to the ACPC plane (specifically, the MNI152_T1_1mm template from FSL using a 6 DOF alignment via FSL commands. This protocol was adapted from the HCP Preprocessing P…

   Shell

4. app-mergeDWI app-mergeDWI Public

   Concatenates one or more diffusion images.

   Shell

5. app-mergeTCK app-mergeTCK Public

   Merge multiple TCK files into one TCK file.

   MATLAB 3

6. LWX_devOfVertTracts LWX_devOfVertTracts Public

   Source code for analysis steps

   MATLAB 1