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Sarah Wagner
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major structural upgrade
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‎.github/dependabot.yml‎

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version: 2
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updates:
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# Maintain dependencies for GitHub Actions
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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interval: "weekly"
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groups:
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actions:
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patterns:
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- "*"
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‎.github/workflows/cd.yml‎

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name: CD
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on:
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workflow_dispatch:
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pull_request:
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push:
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branches:
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- main
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release:
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types:
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- published
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jobs:
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dist:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- uses: hynek/build-and-inspect-python-package@v2
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publish:
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needs: [dist]
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environment: pypi
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permissions:
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id-token: write
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attestations: write
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contents: read
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runs-on: ubuntu-latest
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if: github.event_name == 'release' && github.event.action == 'published'
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steps:
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- uses: actions/download-artifact@v4
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with:
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name: Packages
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path: dist
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- name: Generate artifact attestation for sdist and wheel
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uses: actions/attest-build-provenance@v2
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with:
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subject-path: "dist/*"
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- uses: pypa/gh-action-pypi-publish@release/v1

‎.github/workflows/ci.yml‎

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push:
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branches:
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- main
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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tests:
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runs-on: ubuntu-latest
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strategy:
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fail-fast: false
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matrix:
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python-version:
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- "3.9"
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- "3.13"
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name: Check Python ${{ matrix.python-version }}
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Only needed if using setuptools-scm
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- name: Setup Python ${{ matrix.python-version }}
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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allow-prereleases: true
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- name: Download uv
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uses: astral-sh/setup-uv@v6
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- name: Test package
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run: uv run pytest
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‎.pre-commit-config.yaml‎

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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: "v5.0.0"
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hooks:
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- id: check-added-large-files
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- id: check-case-conflict
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- id: check-merge-conflict
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- id: check-symlinks
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- id: check-yaml
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- id: debug-statements
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- id: end-of-file-fixer
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- id: mixed-line-ending
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- id: name-tests-test
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args: ["--pytest-test-first"]
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- id: requirements-txt-fixer
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- id: trailing-whitespace
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: "v0.11.13"
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hooks:
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# id: ruff-check would go here if using both
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- id: ruff-format
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- id: ruff-check
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args: ["--fix", "--show-fixes"]
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‎LICENSE.txt‎

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MIT License
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Copyright (c) 2025 Sarah M Wagner
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

‎environment.yml‎

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name: lcs_dev
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channels:
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- conda-forge
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dependencies:
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- python=3.12
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- astropy
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- matplotlib
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- numpy
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- tqdm
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- scipy

‎pyproject.toml‎

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[build-system]
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requires = ["hatchling", "hatch-vcs"]
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build-backend = "hatchling.build"
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[project]
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name = "lightcurves"
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dynamic = ["version"]
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description = "A package to analyze any kind of light curve/time series, e.g. with Bayesian Blocks, flare fitting (HOP), and a stochastic processe"
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readme = "README.md"
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authors = [
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{ name = "Sarah Wagner", email = "[email protected]" },
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]
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maintainers = [
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{ name = "Sarah Wagner", email = "[email protected]" },
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]
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license = { text = "MIT" }
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classifiers = [
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"Intended Audience :: Science/Research",
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"License :: OSI Approved :: MIT License",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.10",
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"Programming Language :: Python :: 3.11",
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"Topic :: Scientific/Engineering :: Astronomy",
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"Topic :: Scientific/Engineering :: Physics",
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"Development Status :: 4 - Beta",
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]
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requires-python = ">=3.10"
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#list of dependencies.
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#do not list imports from standard library like logging or pickle
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dependencies = [
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"astropy",
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"numpy",
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"pandas",
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"scipy",
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"tqdm",
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"matplotlib",
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"lmfit"
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]
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[tool.hatch.version]
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source = "vcs"
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[tool.hatch.build.hooks.vcs]
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version-file = "src/lightcurves/_version.py"
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[tool.hatch.build.targets.wheel]
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includes = ["src/lightcurves"]
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[tool.ruff.lint]
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extend-select = [
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"ARG", # flake8-unused-arguments
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"B", # flake8-bugbear
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"C4", # flake8-comprehensions
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"EM", # flake8-errmsg
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"EXE", # flake8-executable
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"FURB", # refurb
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"G", # flake8-logging-format
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"I", # isort
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"ICN", # flake8-import-conventions
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"NPY", # NumPy specific rules
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"PD", # pandas-vet
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"PGH", # pygrep-hooks
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"PIE", # flake8-pie
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"PL", # pylint
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"PT", # flake8-pytest-style
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"PTH", # flake8-use-pathlib
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"PYI", # flake8-pyi
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"RET", # flake8-return
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"RUF", # Ruff-specific
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"SIM", # flake8-simplify
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"T20", # flake8-print
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"UP", # pyupgrade
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"YTT", # flake8-2020
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]
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ignore = [
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"PLR09", # Too many <...>
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"PLR2004", # Magic value used in comparison
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]
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typing-modules = ["mypackage._compat.typing"]
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isort.required-imports = ["from __future__ import annotations"]
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[tool.ruff.lint.per-file-ignores]
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"tests/**" = ["T20"]
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‎HOP.py‎ renamed to ‎src/lightcurves/HOP.py‎

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‎HopFinder.py‎ renamed to ‎src/lightcurves/HopFinder.py‎

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‎LC.py‎ renamed to ‎src/lightcurves/LC.py‎

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