Dockerfile

# Dockerfile for aroma test installation under neurodebian/ubuntu

FROM neurodebian:xenial
MAINTAINER Ron Hartley-Davies (rtrhd@bristol.ac.uk)
LABEL version="aroma-0.4.0"

# Rewrite sources list as contrib and non-free not included
RUN echo 'deb http://neuro.debian.net/debian xenial main contrib non-free' > /etc/apt/sources.list.d/neurodebian.sources.list \
&& echo 'deb http://neuro.debian.net/debian data main contrib non-free' >> /etc/apt/sources.list.d/neurodebian.sources.list

# Dependencies: python packages, fsl, and testing tools
# lynx is there to stop fsl pulling in firefox via dependence on <www-browser>
RUN apt-get update && apt-get install -y --no-install-recommends \
    bzip2 \
    curl \
    ca-certificates \
    lynx \
    fsl-5.0-core \
    fsl-mni152-templates \
    make \
    python-six \
    python-nibabel \
    python-nose \
    python-numpy \
    python-setuptools \
&& apt-get autoremove && apt-get clean && rm -rf /var/lib/apt/lists/*

# Copy src tree into place and run package install
RUN useradd --create-home aroma
COPY . /home/aroma/icaaroma
WORKDIR /home/aroma/icaaroma
RUN python setup.py install

# do this explicitly as COPY doesn't respect USER command
RUN chown -R aroma /home/aroma/icaaroma

# User and environment to run with
USER aroma
ENV FSLDIR /usr/share/fsl/5.0
ENV LD_LIBRARY_PATH /usr/lib/fsl/5.0
ENV FSLOUTPUTTYPE NIFTI_GZ

# Default command  for "docker run" (nb aroma is on the path)
# Other commands such as 'make tests' can be run explicitly
CMD ["aroma", "--help"]