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eedrummereedrummer
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Merge pull request #959 from synthetichealth/hiv
HIV Module
2 parents 4be5dd4 + 451400a commit 4b4dcf9

25 files changed

Lines changed: 11396 additions & 2 deletions

‎src/main/java/org/mitre/synthea/engine/State.java‎

Lines changed: 25 additions & 1 deletion
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@@ -2215,4 +2215,28 @@ public boolean process(Person person, long time) {
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}
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}
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}
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}
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/**
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* The Vaccine state type indicates a point in the module where the patient is vaccinated.
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*/
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public static class Vaccine extends State {
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private int series;
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private List<Code> codes;
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@Override
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public Vaccine clone() {
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Vaccine clone = (Vaccine) super.clone();
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return clone;
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}
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@Override
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public boolean process(Person person, long time) {
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HealthRecord.Immunization entry = person.record.immunization(time, codes.get(0).display);
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for (Code code : codes) {
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entry.codes.add(code);
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}
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entry.series = this.series;
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return true;
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}
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}
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}

‎src/main/resources/modules/hiv/art_sequence.json‎

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@@ -0,0 +1,289 @@
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{
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"name": "ART Sequence",
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"states": {
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"Initial": {
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"type": "Initial",
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"conditional_transition": [
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{
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"transition": "Terminal",
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"condition": {
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"condition_type": "Attribute",
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"attribute": "pregnant",
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"operator": "==",
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"value": true
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}
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},
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{
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"transition": "Year Check"
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}
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]
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},
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"Terminal": {
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"type": "Terminal"
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},
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"1987 to 1994": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_1987_1994",
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"direct_transition": "Set 1987"
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},
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"1995_to_1996": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_1995_1996",
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"direct_transition": "Set 1995"
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},
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"1997_to_2002": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_1997_2002",
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"direct_transition": "Set 1997"
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},
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"2003_to_2005": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_2003_2005",
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"direct_transition": "Set 2003"
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},
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"2006_to_2014": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_2006_2014",
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"direct_transition": "Set 2006"
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},
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"2015+": {
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"type": "CallSubmodule",
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"submodule": "hiv/art_sequence_2015",
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"direct_transition": "Set 2015"
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},
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"Year Check": {
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"type": "Simple",
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"conditional_transition": [
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{
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"transition": "Check 2015",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 2015,
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"value": 0
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}
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},
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{
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"transition": "Check 2006",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 2006,
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"value": 0
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}
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},
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{
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"transition": "Check 2003",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 2003,
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"value": 0
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}
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},
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{
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"transition": "Check 1997",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 1997,
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"value": 0
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}
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},
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{
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"transition": "Check 1995",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 1995,
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"value": 0
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}
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},
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{
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"transition": "1987 to 1994",
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"condition": {
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"condition_type": "Date",
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"operator": ">=",
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"year": 1987,
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"value": 0
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}
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},
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{
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"transition": "Set Zero"
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}
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]
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},
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"Set 1995": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 1995
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},
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"Stop All 1995": {
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"type": "CallSubmodule",
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"submodule": "hiv/stop_all_art_meds",
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"direct_transition": "1995_to_1996"
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},
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"Check 1995": {
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"type": "Simple",
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"conditional_transition": [
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{
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"transition": "Terminal",
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": ">=",
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"value": 1995
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}
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},
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{
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"transition": "Stop All 1995"
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}
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]
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},
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"Check 2015": {
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"type": "Simple",
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"complex_transition": [
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{
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": "is nil"
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},
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"distributions": [],
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"transition": "Stop All 2015"
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},
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{
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": ">=",
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"value": 2015
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},
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"distributions": [],
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"transition": "Terminal"
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},
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{
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"distributions": [
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{
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"distribution": 0.5,
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"transition": "Stop All 2015"
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},
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{
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"distribution": 0.5,
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"transition": "Terminal"
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}
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]
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}
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]
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},
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"Stop All 2015": {
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"type": "CallSubmodule",
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"submodule": "hiv/stop_all_art_meds",
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"direct_transition": "2015+"
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},
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"Set 2015": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 2015
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},
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"Check 2006": {
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"type": "Simple",
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"conditional_transition": [
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{
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"transition": "Terminal",
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": ">=",
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"value": 2006
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}
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},
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{
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"transition": "Stop All 2006"
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}
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]
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},
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"Stop All 2006": {
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"type": "CallSubmodule",
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"submodule": "hiv/stop_all_art_meds",
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"direct_transition": "2006_to_2014"
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},
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"Set 2006": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 2006
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},
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"Check 2003": {
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"type": "Simple",
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"conditional_transition": [
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{
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"transition": "Terminal",
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": ">=",
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"value": 2003
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}
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},
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{
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"transition": "Stop All 2003"
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}
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]
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},
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"Stop All 2003": {
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"type": "CallSubmodule",
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"submodule": "hiv/stop_all_art_meds",
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"direct_transition": "2003_to_2005"
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},
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"Set 2003": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 2003
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},
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"Check 1997": {
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"type": "Simple",
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"conditional_transition": [
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{
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"transition": "Terminal",
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"condition": {
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"condition_type": "Attribute",
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"attribute": "art_year",
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"operator": ">=",
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"value": 1997
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}
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},
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{
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"transition": "Stop All 1997"
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}
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]
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},
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"Stop All 1997": {
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"type": "CallSubmodule",
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"submodule": "hiv/stop_all_art_meds",
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"direct_transition": "1997_to_2002"
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},
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"Set 1997": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 1997
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},
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"Set 1987": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 1987
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},
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"Set Zero": {
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"type": "SetAttribute",
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"attribute": "art_year",
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"direct_transition": "Terminal",
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"value": 0
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}
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},
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"gmf_version": 2
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}

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