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awatson1978awatson1978
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3 new modules
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‎src/main/resources/modules/menstrual_cycle.json‎

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{
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"name": "Wearables_Sleep",
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"remarks": [ "" ],
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"states": {
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"Initial": {
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"type": "Initial",
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"conditional_transition": [
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{
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"transition": "Female",
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"condition": {
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"condition_type": "Gender",
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"gender": "F"
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}
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},
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{
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"transition": "Terminal"
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}
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]
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},
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"Terminal": {
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"type": "Terminal"
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},
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"Female": {
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"type": "Simple",
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"remarks": [
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"About one-in-five Americans use a smart watch or fitness tracker. \n https://www.pewresearch.org/short-reads/2020/01/09/about-one-in-five-americans-use-a-smart-watch-or-fitness-tracker/"
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],
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"distributed_transition": [
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{
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"transition": "Age_13-19",
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"distribution": 0.21
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},
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{
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"transition": "Age_20-29",
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"distribution": 0.21
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},
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{
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"transition": "Age_30-39",
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"distribution": 0.21
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},
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{
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"transition": "Age_40-49",
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"distribution": 0.21
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}
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]
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},
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"Age_13-19": {
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"type": "Delay",
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"direct_transition": "Endometriosis",
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"range": {
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"low": 13,
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"high": 19,
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"unit": "years"
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}
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},
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"Age_20-29": {
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"type": "Delay",
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"direct_transition": "Endometriosis",
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"range": {
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"low": 20,
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"high": 29,
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"unit": "years"
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}
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},
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"Age_30-39": {
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"type": "Delay",
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"direct_transition": "Endometriosis",
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"range": {
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"low": 30,
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"high": 39,
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"unit": "years"
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}
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},
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"Age_40-49": {
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"type": "Delay",
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"direct_transition": "Endometriosis",
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"range": {
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"low": 40,
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"high": 49,
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"unit": "years"
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}
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},
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"Endometriosis": {
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"type": "ConditionOnset",
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"target_encounter": "Obgyn_Encounter",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": 129103003,
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"display": "Endometriosis (disorder)"
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}
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],
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"remarks": [ "" ],
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"distributed_transition": [
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{
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"transition": "Obgyn_Encounter",
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"distribution": 0.2
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},
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{
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"transition": "Symptom_Onset_Delay",
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"distribution": 0.79
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},
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{
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"transition": "Terminal",
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"distribution": 0.01
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}
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]
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},
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"Symptom_Onset_Delay": {
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"type": "Delay",
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"direct_transition": "Menstrual_Cramps_Symptom",
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"range": {
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"low": 1,
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"high": 5,
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"unit": "years"
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}
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},
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"Menstrual_Cramps_Symptom": {
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"type": "Symptom",
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"symptom": "Cramps",
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"cause": "Endometriosis",
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"direct_transition": "Menstrual_Cramps_Symptom_Ends",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": 431416001,
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"display": "Menstrual cramp (finding)"
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}
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]
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},
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"Menstrual_Cramps_Symptom_Ends": {
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"type": "Symptom",
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"symptom": "Cramps",
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"cause": "Endometriosis",
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"direct_transition": "Endometriosis_End"
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},
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"Endometriosis_End": {
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"type": "ConditionEnd",
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"condition_onset": "Endometriosis",
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"direct_transition": "Terminal"
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},
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"Obgyn_Encounter": {
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"type": "Encounter",
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"encounter_class": "emergency",
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"reason": "Gynecology_Exam",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": 185221008,
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"display": "Seen in gynecology clinic (finding)"
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}
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],
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"direct_transition": "Gynecology_Exam"
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},
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"Obgyn_Encounter_End": {
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"type": "EncounterEnd",
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"direct_transition": "Terminal",
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"discharge_disposition": {
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"system": "NUBC",
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"code": "01",
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"display": "Discharged to home care or self care (routine discharge)"
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}
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},
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"Gynecology_Exam": {
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"type": "Procedure",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": 60554003,
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"display": "Polysomnography (procedure)"
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}
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],
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"duration": {
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"low": 5,
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"high": 10,
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"unit": "minutes"
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},
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"direct_transition": "Endocrinology_Sim"
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},
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"Endocrinology_Sim": {
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"type": "Physiology",
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"model": "Roblitz2013_Menstrual_Cycle.xml",
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"solver": "dormand_prince_54",
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"step_size": 1,
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"sim_duration": 28,
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"lead_time": 0,
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"inputs": [
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{
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"from_exp": "#{BMI}",
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"to": "mass"
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}
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],
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"outputs": [
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{
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"from_list": "E2",
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"to": "endocrinology_data",
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"type": "Attribute"
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}
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],
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"direct_transition": "HormonePanel",
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"alt_direct_transition": "Sleep_Imaging"
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},
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"HormonePanel": {
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"type": "Observation",
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"category": "procedure",
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"unit": "",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": "2243-4",
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"display": "Estradiol (E2) [Mass/volume] in Serum or Plasma"
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}
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],
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"sampled_data": {
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"attributes": [
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"endocrinology_data"
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]
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},
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"direct_transition": "HormonePanel_Chart"
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},
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"HormonePanel_Chart": {
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"type": "Observation",
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"category": "procedure",
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"unit": "",
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"codes": [
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{
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"system": "SNOMED-CT",
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"code": "2243-4",
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"display": "Estradiol (E2) [Mass/volume] in Serum or Plasma"
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}
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],
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"attachment": {
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"chart": {
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"type": "line",
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"title": "Estradiol (E2) [Mass/volume] in Serum or Plasma",
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"axis_attribute_x": "time",
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"axis_attribute_y": "IU/L",
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"width": 400,
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"height": 200,
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"series": [
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{
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"attribute": "endocrinology_data"
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}
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]
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}
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},
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"direct_transition": "Clear_endocrinology_data"
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},
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"Clear_endocrinology_data": {
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"type": "SetAttribute",
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"attribute": "endocrinology_data",
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"direct_transition": "Obgyn_Encounter_End"
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}
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},
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"gmf_version": 1
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}

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