rebuild graphs, javadoc and binary distribution at 34f00e2

Author: jawalonoski

build/javadoc/index-all.html

@@ -2193,6 +2193,8 @@ <h2 class="title">C</h2>
 <div class="block">A simple enum to diffirentiate between types of FHIRPaths in the special use case of generating
  FHIR Resources.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/export/flexporter/Mapping.html#customValueSets">customValueSets</a></span> - Variable in class org.mitre.synthea.export.flexporter.<a href="org/mitre/synthea/export/flexporter/Mapping.html" title="class in org.mitre.synthea.export.flexporter">Mapping</a></dt>
+<dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/modules/calculators/Framingham.html#cvd10Year(org.mitre.synthea.world.agents.Person,long,boolean)">cvd10Year(Person, long, boolean)</a></span> - Static method in class org.mitre.synthea.modules.calculators.<a href="org/mitre/synthea/modules/calculators/Framingham.html" title="class in org.mitre.synthea.modules.calculators">Framingham</a></dt>
 <dd>
 <div class="block">Calculates a patient's risk of cardiovascular disease,
@@ -7099,6 +7101,11 @@ <h2 class="title">L</h2>
 <dd>
 <div class="block">Load the given value set into our cache.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/export/flexporter/Mapping.html#loadValueSets()">loadValueSets()</a></span> - Method in class org.mitre.synthea.export.flexporter.<a href="org/mitre/synthea/export/flexporter/Mapping.html" title="class in org.mitre.synthea.export.flexporter">Mapping</a></dt>
+<dd>
+<div class="block">Load the custom ValueSets that this mapping defines, so that the codes can be selected
+ in RandomCodeGenerator.</div>
+</dd>
 <dt><a href="org/mitre/synthea/identity/LocalDateDeserializer.html" title="class in org.mitre.synthea.identity"><span class="typeNameLink">LocalDateDeserializer</span></a> - Class in <a href="org/mitre/synthea/identity/package-summary.html">org.mitre.synthea.identity</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/identity/LocalDateDeserializer.html#%3Cinit%3E()">LocalDateDeserializer()</a></span> - Constructor for class org.mitre.synthea.identity.<a href="org/mitre/synthea/identity/LocalDateDeserializer.html" title="class in org.mitre.synthea.identity">LocalDateDeserializer</a></dt>
@@ -7397,6 +7404,10 @@ <h2 class="title">M</h2>
 <dd>
 <div class="block">Get one of the BFD codes for the supplied Synthea code.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/export/FhirR4.html#mapCodeToCodeableConcept(org.mitre.synthea.world.concepts.HealthRecord.Code,java.lang.String)">mapCodeToCodeableConcept(HealthRecord.Code, String)</a></span> - Static method in class org.mitre.synthea.export.<a href="org/mitre/synthea/export/FhirR4.html" title="class in org.mitre.synthea.export">FhirR4</a></dt>
+<dd>
+<div class="block">Helper function to convert a Code into a CodeableConcept.</div>
+</dd>
 <dt><a href="org/mitre/synthea/export/flexporter/Mapping.html" title="class in org.mitre.synthea.export.flexporter"><span class="typeNameLink">Mapping</span></a> - Class in <a href="org/mitre/synthea/export/flexporter/package-summary.html">org.mitre.synthea.export.flexporter</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/flexporter/Mapping.html#%3Cinit%3E()">Mapping()</a></span> - Constructor for class org.mitre.synthea.export.flexporter.<a href="org/mitre/synthea/export/flexporter/Mapping.html" title="class in org.mitre.synthea.export.flexporter">Mapping</a></dt>
@@ -8259,6 +8270,10 @@ <h2 class="title">P</h2>
 </dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/rif/RIFExporter.html#parseSimpleDate(java.lang.String)">parseSimpleDate(String)</a></span> - Static method in class org.mitre.synthea.export.rif.<a href="org/mitre/synthea/export/rif/RIFExporter.html" title="class in org.mitre.synthea.export.rif">RIFExporter</a></dt>
 <dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/Utilities.html#parseYamlToResources(java.util.List,java.lang.Class)">parseYamlToResources(List&lt;Map&lt;String, Object&gt;&gt;, Class&lt;T&gt;)</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/Utilities.html" title="class in org.mitre.synthea.helpers">Utilities</a></dt>
+<dd>
+<div class="block">Helper method to parse FHIR resources from YAML.</div>
+</dd>
 <dt><a href="org/mitre/synthea/export/rif/enrollment/PartCContractHistory.html" title="class in org.mitre.synthea.export.rif.enrollment"><span class="typeNameLink">PartCContractHistory</span></a> - Class in <a href="org/mitre/synthea/export/rif/enrollment/package-summary.html">org.mitre.synthea.export.rif.enrollment</a></dt>
 <dd>
 <div class="block">Utility class to manage a beneficiary's part C contract history.</div>

build/javadoc/member-search-index.js

@@ -27,7 +27,7 @@
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@@ -273,45 +273,53 @@ <h3>Method Summary</h3>
 </td>
 </tr>
 <tr id="i5" class="rowColor">
+<td class="colFirst"><code>static org.hl7.fhir.r4.model.CodeableConcept</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#mapCodeToCodeableConcept(org.mitre.synthea.world.concepts.HealthRecord.Code,java.lang.String)">mapCodeToCodeableConcept</a></span>&#8203;(<a href="../world/concepts/HealthRecord.Code.html" title="class in org.mitre.synthea.world.concepts">HealthRecord.Code</a>&nbsp;from,
+                        java.lang.String&nbsp;system)</code></th>
+<td class="colLast">
+<div class="block">Helper function to convert a Code into a CodeableConcept.</div>
+</td>
+</tr>
+<tr id="i6" class="altColor">
 <td class="colFirst"><code>protected static org.hl7.fhir.r4.model.Bundle.BundleEntryComponent</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#practitioner(org.hl7.fhir.r4.model.Bundle,org.mitre.synthea.world.agents.Clinician)">practitioner</a></span>&#8203;(org.hl7.fhir.r4.model.Bundle&nbsp;bundle,
             <a href="../world/agents/Clinician.html" title="class in org.mitre.synthea.world.agents">Clinician</a>&nbsp;clinician)</code></th>
 <td class="colLast">
 <div class="block">Map the clinician into a FHIR Practitioner resource, and add it to the given Bundle.</div>
 </td>
 </tr>
-<tr id="i6" class="altColor">
+<tr id="i7" class="rowColor">
 <td class="colFirst"><code>protected static org.hl7.fhir.r4.model.Bundle.BundleEntryComponent</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#provider(org.hl7.fhir.r4.model.Bundle,org.mitre.synthea.world.agents.Provider)">provider</a></span>&#8203;(org.hl7.fhir.r4.model.Bundle&nbsp;bundle,
         <a href="../world/agents/Provider.html" title="class in org.mitre.synthea.world.agents">Provider</a>&nbsp;provider)</code></th>
 <td class="colLast">
 <div class="block">Map the Provider into a FHIR Organization resource, and add it to the given Bundle.</div>
 </td>
 </tr>
-<tr id="i7" class="rowColor">
+<tr id="i8" class="altColor">
 <td class="colFirst"><code>protected static org.hl7.fhir.r4.model.Location</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#providerLocation(org.hl7.fhir.r4.model.Bundle,org.mitre.synthea.world.agents.Provider)">providerLocation</a></span>&#8203;(org.hl7.fhir.r4.model.Bundle&nbsp;bundle,
                 <a href="../world/agents/Provider.html" title="class in org.mitre.synthea.world.agents">Provider</a>&nbsp;provider)</code></th>
 <td class="colLast">
 <div class="block">Map the Provider into a FHIR Location resource, and add it to the given Bundle.</div>
 </td>
 </tr>
-<tr id="i8" class="altColor">
+<tr id="i9" class="rowColor">
 <td class="colFirst"><code>protected static boolean</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#useUSCore3()">useUSCore3</a></span>()</code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr id="i9" class="rowColor">
+<tr id="i10" class="altColor">
 <td class="colFirst"><code>protected static boolean</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#useUSCore4()">useUSCore4</a></span>()</code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr id="i10" class="altColor">
+<tr id="i11" class="rowColor">
 <td class="colFirst"><code>protected static boolean</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#useUSCore5()">useUSCore5</a></span>()</code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr id="i11" class="rowColor">
+<tr id="i12" class="altColor">
 <td class="colFirst"><code>protected static boolean</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#useUSCore6()">useUSCore6</a></span>()</code></th>
 <td class="colLast">&nbsp;</td>
@@ -564,6 +572,25 @@ <h4>practitioner</h4>
 </dl>
 </li>
 </ul>
+<a id="mapCodeToCodeableConcept(org.mitre.synthea.world.concepts.HealthRecord.Code,java.lang.String)">
+<!--   -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>mapCodeToCodeableConcept</h4>
+<pre class="methodSignature">public static&nbsp;org.hl7.fhir.r4.model.CodeableConcept&nbsp;mapCodeToCodeableConcept&#8203;(<a href="../world/concepts/HealthRecord.Code.html" title="class in org.mitre.synthea.world.concepts">HealthRecord.Code</a>&nbsp;from,
+                                                                             java.lang.String&nbsp;system)</pre>
+<div class="block">Helper function to convert a Code into a CodeableConcept. Takes an optional system, which
+ replaces the Code.system in the resulting CodeableConcept if not null.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>from</code> - The Code to create a CodeableConcept from.</dd>
+<dd><code>system</code> - The system identifier, such as a URI. Optional; may be null.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>The converted CodeableConcept</dd>
+</dl>
+</li>
+</ul>
 <a id="getUrlPrefix(java.lang.String)">
 <!--   -->
 </a>

build/javadoc/member-search-index.zip

@@ -27,8 +27,8 @@
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@@ -166,11 +166,16 @@ <h3>Field Summary</h3>
 <td class="colLast">&nbsp;</td>
 </tr>
 <tr class="altColor">
+<td class="colFirst"><code>java.util.List&lt;java.util.Map&lt;java.lang.String,&#8203;java.lang.Object&gt;&gt;</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#customValueSets">customValueSets</a></span></code></th>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
 <td class="colFirst"><code>java.lang.String</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#name">name</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code>java.util.Map&lt;java.lang.String,&#8203;java.lang.Object&gt;</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#variables">variables</a></span></code></th>
 <td class="colLast">&nbsp;</td>
@@ -208,13 +213,21 @@ <h3>Constructor Summary</h3>
 </a>
 <h3>Method Summary</h3>
 <table class="memberSummary">
-<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
 <tr>
 <th class="colFirst" scope="col">Modifier and Type</th>
 <th class="colSecond" scope="col">Method</th>
 <th class="colLast" scope="col">Description</th>
 </tr>
 <tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#loadValueSets()">loadValueSets</a></span>()</code></th>
+<td class="colLast">
+<div class="block">Load the custom ValueSets that this mapping defines, so that the codes can be selected
+ in RandomCodeGenerator.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
 <td class="colFirst"><code>static <a href="Mapping.html" title="class in org.mitre.synthea.export.flexporter">Mapping</a></code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#parseMapping(java.io.File)">parseMapping</a></span>&#8203;(java.io.File&nbsp;mappingFile)</code></th>
 <td class="colLast">
@@ -272,6 +285,15 @@ <h4>variables</h4>
 <pre>public&nbsp;java.util.Map&lt;java.lang.String,&#8203;java.lang.Object&gt; variables</pre>
 </li>
 </ul>
+<a id="customValueSets">
+<!--   -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>customValueSets</h4>
+<pre>public&nbsp;java.util.List&lt;java.util.Map&lt;java.lang.String,&#8203;java.lang.Object&gt;&gt; customValueSets</pre>
+</li>
+</ul>
 <a id="actions">
 <!--   -->
 </a>
@@ -315,7 +337,7 @@ <h3>Method Detail</h3>
 <a id="parseMapping(java.io.File)">
 <!--   -->
 </a>
-<ul class="blockListLast">
+<ul class="blockList">
 <li class="blockList">
 <h4>parseMapping</h4>
 <pre class="methodSignature">public static&nbsp;<a href="Mapping.html" title="class in org.mitre.synthea.export.flexporter">Mapping</a>&nbsp;parseMapping&#8203;(java.io.File&nbsp;mappingFile)
@@ -331,6 +353,17 @@ <h4>parseMapping</h4>
 </dl>
 </li>
 </ul>
+<a id="loadValueSets()">
+<!--   -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>loadValueSets</h4>
+<pre class="methodSignature">public&nbsp;void&nbsp;loadValueSets()</pre>
+<div class="block">Load the custom ValueSets that this mapping defines, so that the codes can be selected
+ in RandomCodeGenerator.</div>
+</li>
+</ul>
 </li>
 </ul>
 </section>