Added continuous integration and tests directory

Author: joseph-hellerstein

.github/workflows/github-actions.yml

@@ -0,0 +1,20 @@
+name: Continous integration
+on: [push]
+jobs:
+  Run-tests:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v4
+      with:
+          python-version: '3.9'
+      env:
+          AGENT_TOOLSDIRECTORY: /opt/hostedtoolcache
+    - name: Install
+      run: |
+        pip install --upgrade pip
+        pip install -r requirements.txt
+    - name: Run tests
+      run: |
+        nose2 --with-coverage tests

notebooks/explore_sedml.ipynb

@@ -269,6 +269,65 @@
     "if len(phrasedml.getLastError()) > 0:\n",
     "    print(phrasedml.getLastError())"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 37,
+   "id": "9a48ccc9-08f7-47bc-b89e-ac3e00453a7b",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "['POINTER',\n",
+       " '__builtins__',\n",
+       " '__cached__',\n",
+       " '__doc__',\n",
+       " '__file__',\n",
+       " '__libdir',\n",
+       " '__loader__',\n",
+       " '__name__',\n",
+       " '__oldir',\n",
+       " '__osname',\n",
+       " '__package__',\n",
+       " '__phrasedLib',\n",
+       " '__sharedLib',\n",
+       " '__spec__',\n",
+       " '__thisfile',\n",
+       " '__version__',\n",
+       " 'addDotXMLToModelSources',\n",
+       " 'c_bool',\n",
+       " 'c_char_p',\n",
+       " 'c_double',\n",
+       " 'c_int',\n",
+       " 'c_long',\n",
+       " 'c_ulong',\n",
+       " 'cdll',\n",
+       " 'clearReferencedSBML',\n",
+       " 'convertFile',\n",
+       " 'convertString',\n",
+       " 'freeAllPhrased',\n",
+       " 'getLastError',\n",
+       " 'getLastErrorLine',\n",
+       " 'getLastPhraSEDML',\n",
+       " 'getLastSEDML',\n",
+       " 'getPhrasedWarnings',\n",
+       " 'inspect',\n",
+       " 'os',\n",
+       " 'platform',\n",
+       " 'setReferencedSBML',\n",
+       " 'setWorkingDirectory',\n",
+       " 'setWriteSEDMLTimestamp']"
+      ]
+     },
+     "execution_count": 37,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "dir(phrasedml.phrasedml)"
+   ]
   }
  ],
  "metadata": {

tests/test_util.py

@@ -0,0 +1,20 @@
+import os
+import time
+import numpy as np
+import unittest
+
+
+IGNORE_TEST = False
+IS_PLOT = False
+
+#############################
+# Tests
+#############################
+class TestFunctions(unittest.TestCase):
+
+    def testDummy(sefl):
+        pass
+
+
+if __name__ == '__main__':
+    unittest.main()