Added jupyter notebook of figures

Author: vincent-noel

PopMaBoSS_Paper_Example.ipynb

@@ -0,0 +1,23 @@
+Node A
+{
+  logic = A;
+  rate_up = @logic ? 1.0 : 0.0;
+  rate_down = 0.0 ;
+}
+
+Node B 
+{
+  logic = A & !C;
+  rate_up = @logic ? 2.0 : 0.0;
+  rate_down = 0.0;
+}
+
+Node C 
+{
+  logic = A & !B;
+  rate_up = @logic ? 1.0 : 0.0;
+  rate_down = 0.0;
+}
+
+
+

tuto/maboss/Fork-uneven.bnd

@@ -7,7 +7,7 @@ discrete_time = 0;
 use_physrandgen = FALSE;
 seed_pseudorandom = 100;
 sample_count = 100000;
-max_time = 5;
-time_tick = 0.01;
-thread_count = 6;
+max_time = 5.1;
+time_tick = 0.05;
+thread_count = 16;
 

tuto/maboss/Fork.cfg

@@ -0,0 +1,24 @@
+Node A
+{
+  rate_up = 0.0;
+  rate_down = 0.0 ;
+}
+
+Node B 
+{
+  logic = A & !C;
+  rate_up = @logic ? 2.0 : 0.0;
+  rate_down = 0.0;
+}
+
+Node C 
+{
+  logic = A & !B;
+  rate_up = @logic ? 1.0 : 0.0;
+  rate_down = 0.0;
+}
+
+division
+{
+  rate = A & !(B|C) ? 1.0 : 0.0;
+}

tuto/popmaboss/Fork-uneven.bnd

@@ -0,0 +1,17 @@
+A.istate=1;
+B.istate=0;
+C.istate=0;
+
+init_pop = 1;
+
+$DivRate=0.1;
+
+discrete_time = 0;
+//use_physrandgen = FALSE;
+use_physrandgen = FALSE;
+seed_pseudorandom = 100;
+sample_count = 100000;
+max_time = 10;
+time_tick = 0.1;
+thread_count = 6;
+

tuto/popmaboss/Fork-uneven.cfg

@@ -2,7 +2,7 @@ A.istate=1;
 B.istate=0;
 C.istate=0;
 
-init_pop = 3;
+init_pop = 1;
 
 $DivRate=0.1;
 

tuto/popmaboss/Fork.cfg

@@ -0,0 +1,26 @@
+Node A
+{
+  logic = A;
+  rate_up = @logic ? 1.0 : 0.0;
+  rate_down = 0.0 ;
+}
+
+Node B 
+{
+  logic = A & !C;
+  rate_up = @logic ? 2.0 : 0.0;
+  rate_down = 0.0;
+}
+
+Node C 
+{
+  logic = A & !B;
+  rate_up = @logic ? 1.0 : 0.0;
+  rate_down = 0.0;
+}
+
+Node Division
+{
+  rate_up = A & !(B|C) ? $DivRate : 0.0;
+  rate_down = 0.0;
+}

tuto/upmaboss/Fork-uneven.bnd

@@ -0,0 +1,15 @@
+A.istate=1;
+B.istate=0;
+C.istate=0;
+Division.istate=0;
+$DivRate=1;
+
+discrete_time = 0;
+//use_physrandgen = FALSE;
+use_physrandgen = FALSE;
+seed_pseudorandom = 100;
+sample_count = 100000;
+max_time = 0.1;
+time_tick = 0.01;
+thread_count = 6;
+