install system dependencies #2 #15
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: CI | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| r: ['4.1'] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.r }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get -y install libcurl4-openssl-dev libssl-dev make zlib1g-dev libglpk-dev libxml2-dev pandoc libpng-dev python3 libicu-dev | |
| - name: Cache renv library | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/R/renv | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install R package dependencies | |
| run: | | |
| install.packages("renv") | |
| renv::restore() | |
| shell: Rscript {0} | |
| - name: Install check tools | |
| run: | | |
| renv::install(c("rcmdcheck", "covr")) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
| ) | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |