SLEAP v1.3.0 (#1231)

Author: roomrys

.conda/bld.bat

@@ -21,6 +21,7 @@ pip install attrs==21.2.0
 pip install cattrs==1.1.1
 pip install jsonpickle==1.2
 pip install networkx
+pip install nixio>=1.5.3
 @REM pip install tensorflow>=2.6.3,<=2.7.1
 @REM pip install h5py>=3.1.0,<=3.6.0
 pip install python-rapidjson
@@ -36,6 +37,7 @@ pip install imgaug==0.4.0
 pip install scikit-image
 pip install scikit-learn==1.0.*
 pip install scikit-video
+pip install tensorflow-hub
 pip install imgstore==0.2.9
 pip install qimage2ndarray==1.9.0
 pip install jsmin

.conda/build.sh

@@ -18,6 +18,7 @@ pip install attrs==21.2.0
 pip install cattrs==1.1.1
 pip install jsonpickle==1.2
 pip install networkx
+pip install nixio>=1.5.3
 # pip install tensorflow>=2.6.3,<=2.7.1
 # pip install h5py>=3.1.0,<=3.6.0
 pip install python-rapidjson
@@ -33,6 +34,7 @@ pip install imgaug==0.4.0
 pip install scikit-image
 pip install scikit-learn==1.0.*
 pip install scikit-video
+pip install tensorflow-hub
 pip install imgstore==0.2.9
 pip install qimage2ndarray==1.9.0
 pip install jsmin

.conda/meta.yaml

@@ -16,7 +16,7 @@ about:
   summary: {{ data.get('description') }}
 
 build:
-  number: 1
+  number: 4
 
 source:
   path: ../

.github/ISSUE_TEMPLATE/bug_report.md

@@ -28,7 +28,7 @@ Please include information about how you installed.
 - OS:
 <!-- [e.g. ubuntu 20.04, macOS 11.0] -->
 - Version(s):
-<!-- e.g. [SLEAP v1.3.0a0, python 3.8] --->
+<!-- e.g. [SLEAP v1.3.0, python 3.8] --->
 - SLEAP installation method (listed [here](https://sleap.ai/installation.html#)):
   - [ ] [Conda from package](https://sleap.ai/installation.html#conda-package)
   - [ ] [Conda from source](https://sleap.ai/installation.html#conda-from-source)

.github/workflows/website.yml

@@ -8,7 +8,7 @@ on:
       # 'main' triggers updates to 'sleap.ai', all others to 'sleap.ai/develop'
       - main
       - develop
-      - liezl/docs-apple-silicon
+      - liezl/1.3.0-build-cleanup
     paths:
       - "docs/**"
       - "README.rst"

README.rst

@@ -11,7 +11,7 @@
    :alt: Coverage
 
 .. |Documentation| image:: 
-   https://img.shields.io/github/workflow/status/talmolab/sleap/Build%20website?label=Documentation
+   https://img.shields.io/badge/Documentation-sleap.ai-lightgrey
    :target: https://sleap.ai
    :alt: Documentation
 

docs/conf.py

@@ -28,15 +28,15 @@
 copyright = f"2019–{date.today().year}, Talmo Lab"
 
 # The short X.Y version
-version = "1.3.0a0"
+version = "1.3.0"
 
 # Get the sleap version
 # with open("../sleap/version.py") as f:
 #     version_file = f.read()
 #     version = re.search("\d.+(?=['\"])", version_file).group(0)
 
 # Release should be the full branch name
-release = "v1.3.0a0"
+release = "v1.3.0"
 
 html_title = f"SLEAP ({release})"
 html_short_title = "SLEAP"

docs/installation.md

@@ -64,7 +64,7 @@ On Windows, our personal preference is to use alternative terminal apps like [Cm
 ### `conda` package
 
 ```bash
-conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.2.9
+conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.3.0
 ```
 
 **This is the recommended installation method**. Works on **Windows** and **Linux**.
@@ -113,7 +113,7 @@ conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.2.9
 ### `pip` package
 
 ```bash
-pip install sleap==1.2.9
+pip install sleap==1.3.0
 ```
 
 This works on **any OS except Apple silicon** and on **Google Colab**.

environment.yml

@@ -7,7 +7,7 @@ dependencies:
   - conda-forge::pyside2>=5.13.2,<=5.14.1
   - conda-forge::h5py=3.1.0
   - conda-forge::scipy>=1.4.1,<=1.7.3
-  - pillow=8.4.0
+  - conda-forge::pillow=8.4.0
   - shapely=1.7.1
   - conda-forge::pandas
   - ffmpeg
@@ -17,7 +17,7 @@ dependencies:
   # - sleap::tensorflow=2.7.0
   # - sleap::pyside2=5.14.1
   - qtpy>=2.0.1
-  - conda-forge::pip!=22.0.4
+  - conda-forge::pip
   - pip:
       - "--editable=."
       - "--requirement=./dev_requirements.txt"

environment_build.yml

@@ -14,6 +14,7 @@ dependencies:
     # - cudatoolkit=11.3.1
     # - cudnn=8.2.1
     # - nvidia::cuda-nvcc=11.3
+    - protobuf=3.20.*  # https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates
     - qtpy>=2.0.1
     - conda-build=3.21.7
     - anaconda-client