rkt-rrr-base.sh

#!/usr/bin/env bash
set -ex

# References:
# https://mark911.wordpress.com/2016/02/06/how-to-compile-and-install-wget-and-rstudio-server-from-source-code-via-github-in-ubuntu-14-04-lts-64-bit/
# https://github.com/rocker-org/rocker-versioned/blob/master/r-ver/3.4.1/Dockerfile#L44
# https://www.stephenrlang.com/2017/03/setting-up-the-old-releases-repo-for-ubuntu/
# https://www.warpconduit.net/2011/07/31/apt-repository-for-old-ubuntu-releases/
# https://coderwall.com/p/3n6xka/fix-apt-on-old-unsupported-ubuntu-releases

R_VERSION=${R_VERSION:-3.4.1}
version="${R_VERSION}.1"
rname="rrr-base"
name="rkt-${rname}" #: r,littler,rserver no packages installed rkt-rrr-tidy: r,littler,rserver recommends and tidy packages, rkt-rrr-devel: r,littler,rserver recommends and tidy devel environment
dist="yakkety"
arch="amd64"
mirror="http://archive.ubuntu.com/ubuntu"
out=/tmp/r-aci #$(mktemp -d)

BUILD_AUTHOR="TAQTIQA LLC"
BUILD_EMAIL="admin@taqtiqa.com"
BUILD_ORG="taqtiqa.com"
BUILD_DATE=${BUILD_DATE:-}
ACI_PREFIX="${BUILD_ORG}/${name}"

LC_ALL=en_US.UTF-8
LANG=en_US.UTF-8
TERM=xterm

if [ "$EUID" -ne 0 ]; then
    echo "This script uses functionality which requires root privileges"
    exit 1
fi

ACBUILD="/opt/acbuild/bin/acbuild --debug"

# In the event of the script exiting, end the build
acbuildend() {
    export EXIT=$?
    $ACBUILD end && exit $EXIT
}
function check_tool {
if ! which $1; then
    echo "Get $1 and put it in your \$PATH" >&2;
    exit 1;
fi
}

MODIFY=${MODIFY:-""}
FLAGS=${FLAGS:-""}
IMG_NAME="${BUILD_ORG}/${name}"
IMG_VERSION=${version}
ACI_FILE=${name}-linux-amd64-${version}.aci

#     libjpeg62-turbo \

PKG_LIST="bash-completion \
ca-certificates \
file \
fonts-texgyre \
g++ \
gfortran \
gnupg2 \
dirmngr \
gsfonts \
libcurl3 \
libicu57 \
libjpeg-dev \
libopenblas-base \
libopenblas-dev \
libpangocairo-1.0-0 \
libpng16-16 \
libreadline7 \
libtiff5 \
make \
unzip \
zip"

# xorg-dev
BUILDDEPS="aptitude \
build-essential \
curl \
default-jdk \
fort77 \
gcc-multilib \
gfortran \
gobjc++ \
libblas-dev \
libbz2-dev \
libcairo2-dev \
libcurl4-openssl-dev \
libpango1.0-dev \
libjpeg-dev \
libicu-dev \
libpcre3-dev \
libpng-dev \
libreadline-dev \
libtiff5-dev \
liblzma-dev \
libx11-dev \
libxt-dev \
perl \
tcl8.6-dev \
tk8.6-dev \
texinfo \
texlive-extra-utils \
texlive-fonts-recommended \
texlive-fonts-extra \
texlive-latex-recommended \
x11proto-core-dev \
xauth \
xfonts-base \
xvfb \
zlib1g-dev"

if [ ! -e /tmp/basic_rootfs ]; then
    mkdir -p ${out}
    debootstrap --verbose --force-check-gpg --variant=minbase \
    --components=main,universe,multiverse,restricted --include="${PKG_LIST}" \
    --arch="${arch}" $dist $out $mirror
#    rm -rf ${out}/var/cache/apt/archives/*
    pushd ${out}
      # Download source code
      curl -O https://cran.r-project.org/src/base/R-3/R-${R_VERSION}.tar.gz
      # Extract source code
      tar -xf R-${R_VERSION}.tar.gz
      rm R-${R_VERSION}.tar.gz
    popd
    cp ./scripts/${rname}_build.sh ${out}/R-${R_VERSION}/${rname}_build.sh
    chmod +x ${out}/R-${R_VERSION}/${rname}_build.sh
    mv $out /tmp/basic_rootfs
fi

#mkdir -p ${out}/
#pushd ${out}/
#  # Download source code
#  #curl -O https://cran.r-project.org/src/base/R-3/R-${R_VERSION}.tar.gz
#  # Extract source code
#  #tar -xf R-${R_VERSION}.tar.gz
#  #rm R-${R_VERSION}.tar.gz
#popd
#cp ./scripts/${rname}_build.sh ${out}/R-${R_VERSION}/${rname}_build.sh
#chmod +x ${out}/R-${R_VERSION}/${rname}_build.sh
#cp -r $out basic_rootfs

cp -r /tmp/basic_rootfs/ /tmp/rootfs/

#rkt trust --prefix=tklx.org/base
#rkt fetch tklx.org/base:0.1.1

# Start the build with ACI bootstrapped above
$ACBUILD begin /tmp/rootfs
trap acbuildend EXIT

# Name the ACI
$ACBUILD set-name ${IMG_NAME}

# Based on Turnley Linux base image of Debian (12 MB)
# rkt trust --prefix=tklx.org/base
#$ACBUILD dep add tklx.org/base:0.1.1

$ACBUILD label add version ${version}
$ACBUILD label add arch amd64
$ACBUILD label add os linux
$ACBUILD annotation add authors "${BUILD_AUTHOR} <${BUILD_EMAIL}>"

$ACBUILD set-user 0
$ACBUILD set-group 0
$ACBUILD environment add OS_VERSION ${dist}

$ACBUILD run -- ls /etc/apt/
$ACBUILD run -- ls /etc/apt/sources.list.d
$ACBUILD run -- cat /etc/apt/sources.list
#$ACBUILD run -- cat /etc/apt/sources.list.d/sources.list
#$ACBUILD run -- cat /etc/apt/sources.list.d/security.sources.list

#sed -i "s/deb.debian.org/cloudfront.debian.net/" /etc/apt/sources.list
#sed -i "s/security.debian.org/cloudfront.debian.net\/debian-security/" /etc/apt/sources.list

### dependencies. Use cloudfront, official CDN gives frequent 503 errors
#$ACBUILD run -- echo "deb  http://cloudfront.debian.net/debian stretch main contrib non-free" >/etc/apt/sources.list.d/sources.list
#$ACBUILD run -- echo "deb-src  http://cloudfront.debian.net/debian stretch main contrib non-free" >>/etc/apt/sources.list.d/sources.list
#
#$ACBUILD run -- echo "deb  http://cloudfront.debian.net/debian stretch-updates main contrib non-free" >>/etc/apt/sources.list.d/sources.list
#$ACBUILD run -- echo "deb-src  http://cloudfront.debian.net/debian stretch-updates main contrib non-free" >>/etc/apt/sources.list.d/sources.list
#
#$ACBUILD run -- echo "deb http://cloudfront.debian.net/debian-security stretch/updates main contrib non-free" >/etc/apt/sources.list.d/security.sources.list
#$ACBUILD run -- echo "deb-src http://cloudfront.debian.net/debian-security stretch/updates main contrib non-" >>/etc/apt/sources.list.d/security.sources.list

#$ACBUILD run -- cat /etc/apt/sources.list.d/sources.list
#$ACBUILD run -- cat /etc/apt/sources.list.d/security.sources.list

#
# Set locale before installing dev tools
#
$ACBUILD run -- echo "en_US.UTF-8 UTF-8" >>/etc/locale.gen
$ACBUILD run -- locale-gen en_US.utf8
$ACBUILD run -- /usr/sbin/update-locale LANG=en_US.UTF-8

$ACBUILD run -- apt-get update
#$ACBUILD run -- apt-get install -y aptitude
#$ACBUILD run -- aptitude install --download-only --assume-yes --full-resolver --purge-unused --without-recommends $BUILDDEPS
#$ACBUILD run -- aptitude install --assume-yes --full-resolver --purge-unused --without-recommends $BUILDDEPS
$ACBUILD run -- apt-get --download-only --assume-yes --no-install-recommends install $BUILDDEPS
$ACBUILD run -- apt-get --assume-yes --no-install-recommends install $BUILDDEPS

#
# Run R install script and clean up temp files
#
wd=/home/hedge/RubymineProjects/psac/coreos-vagrant/rkt-aci/r-project/.acbuild/currentaci/rootfs
$ACBUILD run -- apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
$ACBUILD run -- whereis libblas.so
$ACBUILD run --working-dir=/R-${R_VERSION} -- /bin/bash -c "eval /R-${R_VERSION}/${rname}_build.sh"
$ACBUILD run -- rm -rf /R-${R_VERSION}

#
# Setup RServer users
#
$ACBUILD run -- groupadd -g 1000 rstudio
$ACBUILD run -- useradd -u 1000 -g 1000 -d / -M rstudio
$ACBUILD set-user 1000
$ACBUILD set-group 1000

# Add a port for the RServer
$ACBUILD port add rserver tcp 8787

#Configure RServer and RSession
# https://support.rstudio.com/hc/en-us/articles/200552316-Configuring-the-Server
# Set the working directory the app will run in inside the container

# Cleanup build dependencies
# $ACBUILD run -- aptitude purge --assume-yes $BUILDDEPS
# $ACBUILD run -- aptitude purge --assume-yes $BUILDDEPS

# Some recurrences have been known
$ACBUILD run -- apt-get autoremove --purge -y
$ACBUILD run -- apt-get autoremove --purge -y
$ACBUILD run -- apt-get clean

$ACBUILD run --  /usr/bin/rstudio-server verify-installation
# Run RStudio Server
$ACBUILD set-exec -- nohup /usr/bin/rstudio-server start

if [ -z "$MODIFY" ]; then
  # Save the ACI
  $ACBUILD write --overwrite ${name}-${version}-linux-${arch}.aci
fi

# Sign ACI
gpg2 --armor --export ${BUILD_EMAIL} >${BUILD_ORG}_public.asc
#rkt trust --prefix=${ACI_PREFIX} ./${BUILD_ORG}_public.asc
gpg2 --yes --batch --armor \
--output "${name}"-"${version}"-"${os}"-"${arch}".aci.asc \
--detach-sign "${name}"-"${version}"-"${os}"-"${arch}".aci

if [ -e ${out}/tmp/ ]; then
  rm -rf ${out}/tmp/*
fi

$ACBUILD end