Skip to content

templateflow/python-client

Repository files navigation

TemplateFlow Python Client

Zenodo preprint CircleCI Build Status Pypi

The TemplateFlow Python client provides a lightweight interface for working with the TemplateFlow Archive. It focuses on three core features:

  • Discover and retrieve curated, BIDS-like template resources from Python.
  • Transparently cache data from the public S3 mirror or a local DataLad clone.
  • Share configuration with the command line interface and NiPreps' compatibility wrappers.

Quickstart

>>> from templateflow import TemplateFlowClient
>>> client = TemplateFlowClient()
>>> client.get('MNI152NLin2009cAsym', atlas='HarvardOxford', suffix='probseg')
[PosixPath('.../tpl-MNI152NLin2009cAsym_atlas-HarvardOxford_probseg.nii.gz')]

Use :mod:`templateflow.api` when you need drop-in compatibility with older TemplateFlow helpers that expose top-level :func:`~templateflow.api.get` or :func:`~templateflow.api.ls` functions.

Configuration reference

You can configure the client via environment variables or constructor keywords.

Environment variable TemplateFlowClient keyword Purpose
TEMPLATEFLOW_HOME root Cache directory for downloaded templates.
TEMPLATEFLOW_USE_DATALAD use_datalad Opt-in to DataLad-backed cache management.
TEMPLATEFLOW_AUTOUPDATE autoupdate Allow automatic cache updates on import/use.

Publishing resources in the TemplateFlow Archive

Please check the Contributing section of the TemplateFlow website.

License information

TemplateFlow adheres to the general licensing guidelines of the NiPreps framework.

License

Copyright (c) 2021, the NiPreps Developers.

The TemplateFlow Python Client is licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0.

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Acknowledgements

This work is steered and maintained by the NiPreps Community. The development of this resource was supported by the Laura and John Arnold Foundation (RAP and KJG), the NIBIB (R01EB020740, SSG; 1P41EB019936-01A1SSG, YOH), the NIMH (RF1MH121867, RAP, OE; R24MH114705 and R24MH117179, RAP; 1RF1MH121885 SSG), NINDS (U01NS103780, RAP), and NSF (CRCNS 1912266, YOH). OE acknowledges financial support from the SNSF Ambizione project “Uncovering the interplay of structure, function, and dynamics of brain connectivity using MRI” (grant number PZ00P2_185872).

About

A python client to query TemplateFlow via pyBIDS

Resources

License

Stars

Watchers

Forks

Packages

 
 
 

Contributors