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install code for tutorials
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docs/tutorials/scgen_batch_removal.ipynb

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"source": [
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"import sys\n",
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"#if branch is stable, will install via pypi, else will install from source\n",
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"branch = \"master\"\n",
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"branch = \"stable\"\n",
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"IN_COLAB = \"google.colab\" in sys.modules\n",
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"\n",
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"if IN_COLAB and branch == \"stable\":\n",

docs/tutorials/scgen_perturbation_prediction.ipynb

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"source": [
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"import sys\n",
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"#if branch is stable, will install via pypi, else will install from source\n",
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"branch = \"pytorch\"\n",
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"branch = \"stable\"\n",
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"IN_COLAB = \"google.colab\" in sys.modules\n",
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"\n",
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"if IN_COLAB and branch == \"stable\":\n",
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" !pip install --quiet scvi-tools[tutorials]\n",
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" !pip install --quiet scgen[tutorials]\n",
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"elif IN_COLAB and branch != \"stable\":\n",
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" !pip install --quiet --upgrade jsonschema\n",
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" !pip install --quiet git+https://github.com/yoseflab/scvi-tools@$branch#egg=scgen[tutorials]"
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" !pip install --quiet git+https://github.com/theislab/scgen@$branch#egg=scgen[tutorials]"
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]
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},
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{

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