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fix datasets links
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scvelo/datasets.py

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@@ -41,7 +41,7 @@ def toy_data(n_obs=None):
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def dentategyrus(adjusted=True):
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"""Dentate Gyrus neurogenesis.
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Data from `Hochgerner et al. (2018) <https://doi.org/10.1038/s41593-017-0056-2 >`_.
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Data from `Hochgerner et al. (2018) <https://doi.org/10.1038/s41593-017-0056-2>`__.
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Dentate gyrus (DG) is part of the hippocampus involved in learning, episodic memory
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formation and spatial coding. The experiment from the developing DG comprises two
@@ -90,7 +90,7 @@ def dentategyrus(adjusted=True):
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def forebrain():
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"""Developing human forebrain.
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From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6 >`_.
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From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6>`__.
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Forebrain tissue of a human week 10 embryo, focusing on glutamatergic neuronal
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lineage, obtained from elective routine abortions (10 weeks post-conception).
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def pancreas():
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"""Pancreatic endocrinogenesis.
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Data from `Bastidas-Ponce et al. (2019) <https://doi.org/10.1242/dev.173849 >`_.
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Data from `Bastidas-Ponce et al. (2019) <https://doi.org/10.1242/dev.173849>`__.
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Pancreatic epithelial and Ngn3-Venus fusion (NVF) cells during secondary transition
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with transcriptome profiles sampled from embryonic day 15.5.
@@ -141,7 +141,7 @@ def pancreas():
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def dentategyrus_lamanno():
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"""Dentate Gyrus neurogenesis.
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From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6 >`_.
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From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6>`__.
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The experiment from the developing mouse hippocampus comprises two time points
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(P0 and P5) and reveals the complex manifold with multiple branching lineages
@@ -184,7 +184,7 @@ def dentategyrus_lamanno():
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def gastrulation():
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"""Mouse gastrulation.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
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Gastrulation represents a key developmental event during which embryonic pluripotent
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cells diversify into lineage-specific precursors that will generate the adult organism.
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def gastrulation_e75():
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"""Mouse gastrulation subset to E7.5.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
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Gastrulation represents a key developmental event during which embryonic pluripotent
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cells diversify into lineage-specific precursors that will generate the adult organism.
@@ -234,7 +234,7 @@ def gastrulation_e75():
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def gastrulation_erythroid():
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"""Mouse gastrulation subset to erythroid lineage.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
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Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
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Gastrulation represents a key developmental event during which embryonic pluripotent
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cells diversify into lineage-specific precursors that will generate the adult organism.
@@ -256,7 +256,7 @@ def gastrulation_erythroid():
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def bonemarrow():
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"""Human bone marrow.
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Data from `Setty et al. (2019) <https://doi.org/10.1242/dev.173849 >`_.
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Data from `Setty et al. (2019) <https://doi.org/10.1242/dev.173849>`__.
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The bone marrow is the primary site of new blood cell production or haematopoiesis.
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It is composed of hematopoietic cells, marrow adipose tissue, and supportive stromal cells.
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def pbmc68k():
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"""Peripheral blood mononuclear cells.
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Data from `Zheng et al. (2017) <https://doi.org/10.1038/ncomms14049 >`_.
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Data from `Zheng et al. (2017) <https://doi.org/10.1038/ncomms14049>`__.
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This experiment contains 68k peripheral blood mononuclear cells (PBMC) measured using 10X.
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