Skip to content

Issues: theislab/single-cell-best-practices

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
16 Open 11 Closed
16 Open 11 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Question about the spatial/domains.ipynb question Further information is requested
#362 opened Apr 26, 2025 by 11e11
Compatibility between simpleaf quant (spliceu mode) outputs and SoupX question Further information is requested
#350 opened Mar 26, 2025 by cave-beetle
Downstream analysis for sn-ATACseq is not shown in the contents? question Further information is requested
#304 opened Nov 10, 2024 by zyll123
Filter rarely expressed genes/features? question Further information is requested
#298 opened Sep 17, 2024 by kloot
Question about the ambient RNA correction question Further information is requested
#296 opened Aug 22, 2024 by Chaosli98
1
Usage of pvals for volcano plots instead of FDR-corrected p-values question Further information is requested
#295 opened Aug 21, 2024 by ramadatta
Ambient RNA removal and doublet detection for Smart-seq2 dataset question Further information is requested
#273 opened Apr 26, 2024 by ngvananh2508
1
Question about the clustering question Further information is requested
#260 opened Feb 15, 2024 by Gokhan169
@AnnaChristina
2
Normalized Count Scaling Before PCA? question Further information is requested
#257 opened Jan 10, 2024 by AlinaKurjan
Question about observed value and true expression value question Further information is requested
#233 opened Aug 24, 2023 by caodudu
@Zethson
3
Batch-aware highly deviant gene selection question Further information is requested
#221 opened Jul 10, 2023 by AlinaKurjan
@AnnaChristina
3
Intergrating strategy between AIR and transcriptomics question Further information is requested
#219 opened Jul 5, 2023 by zhouzhendiao
@drEast
4
Pseudotime construction question Further information is requested
#207 opened Jun 5, 2023 by ngvananh2508
@WeilerP
2
Scran Normalization question Further information is requested
#186 opened Apr 28, 2023 by ErikaZ95
@AnnaChristina
3
Scaling data before PCA? question Further information is requested
#185 opened Apr 27, 2023 by Ketomihine
@Zethson
4
mitochondrial filtering threshold question Further information is requested
#170 opened Apr 7, 2023 by grst
@AnnaChristina
1
ProTip! Mix and match filters to narrow down what you’re looking for.