Create new variant-gene annotation #11
Description
Hi H-MAGMA team,
I'm trying to create new variant-gene annotation using "H-MAGMA_annotation_generation.rmd".
Specifically, I want to create annotation file by using "GSE86189_LV.po.all.txt.bz2" and "GSE86189_LV.pp.all.txt.bz2" (deposited in https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86189) and my own SNP dataset.
But, I can not figure out how to choose significant interaction from Hi-C data such as "GSE86189_LV.po.all.txt.bz2".
It is appreciated if you could provide me the scripts to do that.
Best,
Nobuyuki