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chore(rebuild): Merge pull request ome#112 from joshmoore/bf2raw
bioformats2raw.layout SHA: 449fbca Reason: push, by @thewtex Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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0.1/index.html

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}
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}
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</style>
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<meta content="Bikeshed version fb1e763a4, updated Tue Mar 1 13:13:50 2022 -0800" name="generator">
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<meta content="Bikeshed version b0de3432c, updated Thu Oct 13 09:16:59 2022 -0700" name="generator">
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<link href="https://ngff.openmicroscopy.org/0.1/" rel="canonical">
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<meta content="8dec6918ee6630f43f339b281b66043e0a797ca4" name="document-revision">
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<meta content="449fbca8a9d3fa7489e2e24039dc15a26ab3338d" name="document-revision">
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<style>/* style-autolinks */
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.css.css, .property.property, .descriptor.descriptor {
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<div class="head">
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<img alt="OME logo (6 circles in a hexagon)" src="http://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
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<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
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<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2022-03-18">18 March 2022</time></span></h2>
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<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2022-10-20">20 October 2022</time></span></h2>
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<div data-fill-with="spec-metadata">
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<dl>
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<dt>This version:
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and are set apart from the normative text
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with <code>class="note"</code>,
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like this: </p>
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<p class="note" role="note">Note, this is an informative note. </p>
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<p class="note" role="note">Note, this is an informative note.</p>
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<h3 class="no-ref no-num heading settled" id="w3c-conformant-algorithms"><span class="content">Conformant Algorithms</span><a class="self-link" href="#w3c-conformant-algorithms"></a></h3>
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<p>Requirements phrased in the imperative as part of algorithms
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(such as "strip any leading space characters"

0.1/schemas/image.schema

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://ngff.openmicroscopy.org/0.1/schemas/image.schema",
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"title": "NGFF Image",
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"description": "JSON from OME-NGFF .zattrs",
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"type": "object",
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"properties": {
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"multiscales": {
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"description": "The multiscale datasets for this image",
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"type": "array",
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"items": {
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"name": {
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},
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"minItems": 1,
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"items": {
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"properties": {
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"path": {
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}
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},
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"required": ["path"]
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}
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},
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"version": {
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"type": "string",
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"enum": [
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"0.1"
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]
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},
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"metadata": {
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"properties": {
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"version": {
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"type": "string"
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}
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}
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}
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},
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"required": [
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"omero": {
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"type": "object",
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"properties": {
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"channels": {
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"window": {
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"type": "object",
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"properties": {
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"end": {
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"max": {
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},
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"min": {
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"type": "number"
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},
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"start": {
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"type": "number"
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}
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},
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"required": [
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"start",
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"min",
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"end",
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"max"
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]
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},
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"label": {
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"type": "string"
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},
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"family": {
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"type": "string"
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},
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"color": {
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"type": "string"
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},
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"active": {
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"type": "boolean"
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}
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},
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"required": [
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"window",
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"color"
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]
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}
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}
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},
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"required": [
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"channels"
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]
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}
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},
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"required": [ "multiscales" ]
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}

0.1/schemas/plate.schema

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://ngff.openmicroscopy.org/0.1/schemas/plate.schema",
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"title": "OME-NGFF plate schema",
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"description": "JSON from OME-NGFF Plate .zattrs",
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"type": "object",
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"properties": {
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"plate": {
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"type": "object",
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"properties": {
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"version": {
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"type": "string",
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"enum": [
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"0.1"
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]
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},
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"name": {
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"type": "string"
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},
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"columns": {
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"description": "Columns of the Plate grid",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"name": {
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"type": "string"
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}
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},
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"required": [
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"name"
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]
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"rows": {
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"description": "Rows of the Plate grid",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"name": {
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"type": "string"
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}
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},
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"required": [
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"name"
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]
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"wells": {
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"description": "Rows of the Plate grid",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"path": {
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"type": "string"
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}
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},
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"required": [
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"path"
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]
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"field_count": {
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"description": "Maximum number of fields per view across all wells."
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},
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"acquisitions": {
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"description": "Rows of the Plate grid",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"id": {
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"type": "number"
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},
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"maximumfieldcount": {
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"type": "number"
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},
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"name": {
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"type": "string"
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},
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"description": {
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"type": "string"
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},
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"starttime": {
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"type": "number"
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}
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},
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"required": [
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"id"
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]
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},
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"minItems": 1,
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"uniqueItems": true
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}
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},
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"required": [
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"version", "columns", "rows", "wells"
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]
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}
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},
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"required": [
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"plate"
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]
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}

0.1/schemas/strict_image.schema

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{
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"$id": "https://ngff.openmicroscopy.org/0.1/schemas/strict_image.schema",
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"allOf": [
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{
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"$ref": "https://ngff.openmicroscopy.org/0.1/schemas/image.schema"
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},
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{
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"properties": {
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"multiscales": {
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"items": {
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"required": [
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"version", "metadata", "type", "name"
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]
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}
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}
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}
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}
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]
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}

0.1/schemas/well.schema

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://ngff.openmicroscopy.org/0.1/schemas/well.schema",
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"title": "OME-NGFF well schema",
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"description": "JSON from OME-NGFF .zattrs",
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"type": "object",
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"properties": {
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"well": {
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"type": "object",
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"properties": {
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"images": {
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"description": "The fields of view for this well",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"acquisition": {
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"description": "A unique identifier within the context of the plate",
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"type": "integer"
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},
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"path": {
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"description": "The path for this field of view subgroup",
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"type": "string",
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"pattern": "^[A-Za-z0-9]+$"
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}
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},
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"required": [
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"path"
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]
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"version": {
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"description": "The version of the specification",
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"type": "string",
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"enum": [
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"0.1"
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]
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}
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},
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"required": [
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"images"
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]
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}
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}
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}

0.2/index.html

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}
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}
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</style>
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<meta content="Bikeshed version fb1e763a4, updated Tue Mar 1 13:13:50 2022 -0800" name="generator">
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<meta content="Bikeshed version b0de3432c, updated Thu Oct 13 09:16:59 2022 -0700" name="generator">
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<link href="https://ngff.openmicroscopy.org/0.2/" rel="canonical">
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<meta content="8dec6918ee6630f43f339b281b66043e0a797ca4" name="document-revision">
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<meta content="449fbca8a9d3fa7489e2e24039dc15a26ab3338d" name="document-revision">
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<style>/* style-autolinks */
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.css.css, .property.property, .descriptor.descriptor {
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<div class="head">
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<img alt="OME logo (6 circles in a hexagon)" src="http://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
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<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
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<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2022-03-18">18 March 2022</time></span></h2>
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<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2022-10-20">20 October 2022</time></span></h2>
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<div data-fill-with="spec-metadata">
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<dl>
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<dt>This version:
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and are set apart from the normative text
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with <code>class="note"</code>,
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like this: </p>
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<p class="note" role="note">Note, this is an informative note. </p>
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<p class="note" role="note">Note, this is an informative note.</p>
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<h3 class="no-ref no-num heading settled" id="w3c-conformant-algorithms"><span class="content">Conformant Algorithms</span><a class="self-link" href="#w3c-conformant-algorithms"></a></h3>
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<p>Requirements phrased in the imperative as part of algorithms
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(such as "strip any leading space characters"

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