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I propose that we implement the following as a thunder registration method:
Manuel Guizar-Sicairos, Samuel T. Thurman, and James R. Fienup, "Efficient subpixel image registration algorithms," Opt. Lett. 33, 156-158 (2008). link
MATLAB implementation
Original Python Port
My generalization for neuro data in d_code
Essentially, images are transformed using an FFT, up-sampled to an arbitrary degree and aligned via cross correlation, the benefit of this algorithm is the efficiency of the up-sampling, and the fact that it is sub-pixel. It works quite well and porting the code should be straight forward.
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