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saveload.cpp
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//----------------------------------------------------------------------------------||
//------------------- saveload.cpp -------------------||
//----------------------------------------------------------------------------------||
// ||
// __ ___ _ _ ____ ____ ___ ____ ||
// \ \ / / \ | \ | | _ \ | _ \_ _/ ___| ||
// \ \ /\ / / _ \ | \| | | | |_____| |_) | | | ||
// \ V V / ___ \| |\ | |_| |_____| __/| | |___ ||
// \_/\_/_/ \_\_| \_|____/ |_| |___\____| ||
// ||
//----------------------------------------------------------------------------------||
//-- (W)akefield (A)cceleration a(n)d (D)LA - (P)article (i)n (C)ell Simulation --||
//----------------------------------------------------------------------------------||
//---Author----------- : Tianhong Wang --------------------||
//---Starting--------- : Feb-27-2019 --------------------||
//---Email------------ : [email protected] --------------------||
//---Group------------ : Dr. Gennady Shvets' Group --------------------||
//---Copyright-------- : (C) 2019 by Tianhong Wang --------------------||
//----------------------------------------------------------------------------------||
//----------------------------------------------------------------------------------||
#include <pnetcdf.h>
#include "wand_PIC.h"
int Domain::Save(int nt)
{
char sFile[128];
char vname1[24];
char vname2[24];
static const int NC_ERR = 1;
int Xpa = p_Partition()->GetXpart();
int Ypa = p_Partition()->GetYpart();
int Idx_x = p_Partition()->RankIdx_X();
int Idx_y = p_Partition()->RankIdx_Y();
int i,j,k, NF;
//========================================
//========= Pnetcdf Variables ============
int retval, ncid;
int nx_id, ny_id, nz_id, F_DIM[3];
int n_e_id, n_n_id, Psi_id, WEx_id, WEy_id, WEz_id, WBx_id, WBy_id, WBz_id;
int AxR_id[NFreqs], AxI_id[NFreqs], AyR_id[NFreqs], AyI_id[NFreqs];
int n_b_id;
int LExR_id[NFreqs], LEyR_id[NFreqs], LEzR_id[NFreqs];
int LBxR_id[NFreqs], LByR_id[NFreqs], LBzR_id[NFreqs];
int LExI_id[NFreqs], LEyI_id[NFreqs], LEzI_id[NFreqs];
int LBxI_id[NFreqs], LByI_id[NFreqs], LBzI_id[NFreqs];
MPI_Info info;
MPI_Info_create(&info);
MPI_Offset fstart[3], fcount[3];
WDOUBLE ne[XGridN][YGridN][ZGridN], nn[XGridN][YGridN][ZGridN], Psi[XGridN][YGridN][ZGridN];
WDOUBLE WEx[XGridN][YGridN][ZGridN], WEy[XGridN][YGridN][ZGridN], WEz[XGridN][YGridN][ZGridN];
WDOUBLE WBx[XGridN][YGridN][ZGridN], WBy[XGridN][YGridN][ZGridN], WBz[XGridN][YGridN][ZGridN];
WDOUBLE AxR[XGridN][YGridN][ZGridN], AxI[XGridN][YGridN][ZGridN];
WDOUBLE AyR[XGridN][YGridN][ZGridN], AyI[XGridN][YGridN][ZGridN];
WDOUBLE LExR[XGridN][YGridN][ZGridN], LExI[XGridN][YGridN][ZGridN];
WDOUBLE LEyR[XGridN][YGridN][ZGridN], LEyI[XGridN][YGridN][ZGridN];
WDOUBLE LEzR[XGridN][YGridN][ZGridN], LEzI[XGridN][YGridN][ZGridN];
WDOUBLE LBxR[XGridN][YGridN][ZGridN], LBxI[XGridN][YGridN][ZGridN];
WDOUBLE LByR[XGridN][YGridN][ZGridN], LByI[XGridN][YGridN][ZGridN];
WDOUBLE LBzR[XGridN][YGridN][ZGridN], LBzI[XGridN][YGridN][ZGridN];
WDOUBLE nb[XGridN][YGridN][ZGridN];
fstart[0] = (Idx_x-1)*XGridN;
fstart[1] = (Idx_y-1)*YGridN;
fstart[2] = 0;
fcount[0] = XGridN;
fcount[1] = YGridN;
fcount[2] = ZGridN;
//========================================
//========= Put Fields for Output ========
for(k=0; k<ZGridN; k++)
{
for(j=1; j<=YGridN; j++)
{
for(i=1; i<=XGridN; i++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
ne[i-1][j-1][k] = 0.5*(ccc.W_Jxx + ccc.W_Jyy + ccc.W_Denn)+0.5*ccc.W_Denn*(1.0+0.5*ccc.W_Asq)/(1+ccc.W_Psi)/(1+ccc.W_Psi);
nn[i-1][j-1][k] = ccc.W_Denn;
nb[i-1][j-1][k] = ccc.B_Den;
Psi[i-1][j-1][k] = ccc.W_Psi;
WEx[i-1][j-1][k] = -ccc.W_Ex+ccc.W_By;
WEy[i-1][j-1][k] = -ccc.W_Ey-ccc.W_Bx;
WEz[i-1][j-1][k] = ccc.W_Ez;
WBx[i-1][j-1][k] = ccc.W_Bx;
WBy[i-1][j-1][k] = ccc.W_By;
WBz[i-1][j-1][k] = ccc.W_Bz;
}
}
}
//========================================
//========= Create nc File ===============
sprintf(sFile,"Fields_%d.nc",nt);
if((retval = ncmpi_create(MPI_COMM_WORLD, sFile, NC_CLOBBER|NC_64BIT_OFFSET, info, &ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error:" << retval << " while creating " << sFile << "." <<'\n';
return NC_ERR;
}
if ( (retval = ncmpi_put_att_WDOUBLE(ncid, NC_GLOBAL, "time", NC_WDOUBLE, 1, &Time)) ) return NC_ERR;
//========================================
//========= Define Dimension =============
if ( (retval = ncmpi_def_dim(ncid, "nx", XGridN*Xpa, &nx_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_dim(ncid, "ny", YGridN*Ypa, &ny_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_dim(ncid, "nz", ZGridN, &nz_id)) ) return NC_ERR;
F_DIM[0] = nx_id;
F_DIM[1] = ny_id;
F_DIM[2] = nz_id;
//========================================
//========= Define Variables =============
if ( (retval = ncmpi_def_var(ncid, "n_e", NC_WDOUBLE, 3, F_DIM, &n_e_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "n_n", NC_WDOUBLE, 3, F_DIM, &n_n_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Psi", NC_WDOUBLE, 3, F_DIM, &Psi_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEx", NC_WDOUBLE, 3, F_DIM, &WEx_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEy", NC_WDOUBLE, 3, F_DIM, &WEy_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEz", NC_WDOUBLE, 3, F_DIM, &WEz_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBx", NC_WDOUBLE, 3, F_DIM, &WBx_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBy", NC_WDOUBLE, 3, F_DIM, &WBy_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBz", NC_WDOUBLE, 3, F_DIM, &WBz_id)) ) return NC_ERR;
// Beam Density;
if(Nbeam){
if ( (retval = ncmpi_def_var(ncid, "n_b", NC_WDOUBLE, 3, F_DIM, &n_b_id)) ) return NC_ERR;}
//===== Laser Wake potential =======
for (NF=0; NF<NFreqs; NF++)
{
if(ifAx[NF])
{
sprintf(vname1,"AxR_%d",NF);sprintf(vname2,"AxI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &AxR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &AxI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LExR_%d",NF);sprintf(vname2,"LExI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &LExR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &LExI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LByR_%d",NF);sprintf(vname2,"LByI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &LByR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &LByI_id[NF])) ) return NC_ERR;
}
if(ifAy[NF])
{
sprintf(vname1,"AyR_%d",NF);sprintf(vname2,"AyI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &AyR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &AyI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LEyR_%d",NF);sprintf(vname2,"LEyI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &LEyR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &LEyI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LBxR_%d",NF);sprintf(vname2,"LBxI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &LBxR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &LBxI_id[NF])) ) return NC_ERR;
}
sprintf(vname1,"LEzR_%d",NF);sprintf(vname2,"LEzI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 3, F_DIM, &LEzR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 3, F_DIM, &LEzI_id[NF])) ) return NC_ERR;
}
if ( (retval = ncmpi_enddef(ncid)) ) return NC_ERR;
//========================================
//============ Put Variables =============
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_e_id, fstart, fcount, &ne[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_n_id, fstart, fcount, &nn[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Psi_id, fstart, fcount, &Psi[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEx_id, fstart, fcount, &WEx[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEy_id, fstart, fcount, &WEy[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEz_id, fstart, fcount, &WEz[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBx_id, fstart, fcount, &WBx[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBy_id, fstart, fcount, &WBy[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBz_id, fstart, fcount, &WBz[0][0][0])) ) return NC_ERR;
if(Nbeam){
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_b_id, fstart, fcount, &nb[0][0][0])) ) return NC_ERR;}
//===== Laser Wake potential =======
for (NF=0; NF<NFreqs; NF++)
{
for(k=0; k<ZGridN; k++)
{
for(j=1; j<=YGridN; j++)
{
for(i=1; i<=XGridN; i++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
if(ifAx[NF])
{
AxR[i-1][j-1][k] = ccc.Acomx[NF].real();
AxI[i-1][j-1][k] = ccc.Acomx[NF].imag();
LExR[i-1][j-1][k] = ccc.L_Ex[NF].real();
LExI[i-1][j-1][k] = ccc.L_Ex[NF].imag();
LByR[i-1][j-1][k] = ccc.L_By[NF].real();
LByI[i-1][j-1][k] = ccc.L_By[NF].imag();
}
if(ifAy[NF])
{
AyR[i-1][j-1][k] = ccc.Acomy[NF].real();
AyI[i-1][j-1][k] = ccc.Acomy[NF].imag();
LEyR[i-1][j-1][k] = ccc.L_Ey[NF].real();
LEyI[i-1][j-1][k] = ccc.L_Ey[NF].imag();
LBxR[i-1][j-1][k] = ccc.L_Bx[NF].real();
LBxI[i-1][j-1][k] = ccc.L_Bx[NF].imag();
}
LEzR[i-1][j-1][k] = ccc.L_Ez[NF].real();
LEzI[i-1][j-1][k] = ccc.L_Ez[NF].imag();
}
}
}
if(ifAx[NF])
{
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AxR_id[NF], fstart, fcount, &AxR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AxI_id[NF], fstart, fcount, &AxI[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LExR_id[NF], fstart, fcount, &LExR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LExI_id[NF], fstart, fcount, &LExI[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LByR_id[NF], fstart, fcount, &LByR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LByI_id[NF], fstart, fcount, &LByI[0][0][0])) ) return NC_ERR;
}
if(ifAy[NF])
{
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AyR_id[NF], fstart, fcount, &AyR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AyI_id[NF], fstart, fcount, &AyI[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEyR_id[NF], fstart, fcount, &LEyR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEyI_id[NF], fstart, fcount, &LEyI[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LBxR_id[NF], fstart, fcount, &LBxR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LBxI_id[NF], fstart, fcount, &LBxI[0][0][0])) ) return NC_ERR;
}
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEzR_id[NF], fstart, fcount, &LEzR[0][0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEzI_id[NF], fstart, fcount, &LEzI[0][0][0])) ) return NC_ERR;
}
if ( (retval = ncmpi_sync(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while syncing " << sFile << "." <<'\n';
return NC_ERR;
}
if ( (retval = ncmpi_close(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while closing " << sFile << "." <<'\n';
return NC_ERR;
}
if(Nbeam) SaveP(nt);
SaveXray(nt);
return 0;
}
int Domain::Save2D(int nt, int savedim, bool part)
{
char sFile[128];
char vname1[24];
char vname2[24];
int Xpa = p_Partition()->GetXpart();
int Ypa = p_Partition()->GetYpart();
int Idx_x = p_Partition()->RankIdx_X();
int Idx_y = p_Partition()->RankIdx_Y();
int i,j,k, NF;
int IndexY, IndexX,nx, nnn;
//========================================
//========= Pnetcdf Variables ============
static const int NC_ERR = 1;
int retval, ncid;
int nx_id, ny_id, nz_id, F_DIM[2];
int n_b_id;
int n_e_id, n_n_id, Psi_id, WEx_id, WEy_id, WEz_id, WBx_id, WBy_id, WBz_id;
int AxR_id[NFreqs], AxI_id[NFreqs], AyR_id[NFreqs], AyI_id[NFreqs];
int LExR_id[NFreqs], LEyR_id[NFreqs], LEzR_id[NFreqs];
int LBxR_id[NFreqs], LByR_id[NFreqs], LBzR_id[NFreqs];
int LExI_id[NFreqs], LEyI_id[NFreqs], LEzI_id[NFreqs];
int LBxI_id[NFreqs], LByI_id[NFreqs], LBzI_id[NFreqs];
switch(savedim)
{
case 1:
nx=XGridN;
IndexY = floor(Ypa/2.0)+1;
break;
case 2:
nx=YGridN;
IndexX = floor(Xpa/2.0)+1;
break;
}
MPI_Info info;
MPI_Info_create(&info);
MPI_Offset fstart[2], fcount[2];
fcount[0]=0;
fstart[0]=0;
fcount[1] = 0;
fstart[1] = 0;
WDOUBLE ne[nx][ZGridN], nn[nx][ZGridN], Psi[nx][ZGridN];
WDOUBLE WEx[nx][ZGridN], WEy[nx][ZGridN], WEz[nx][ZGridN];
WDOUBLE WBx[nx][ZGridN], WBy[nx][ZGridN], WBz[nx][ZGridN];
WDOUBLE AxR[nx][ZGridN], AxI[nx][ZGridN];
WDOUBLE AyR[nx][ZGridN], AyI[nx][ZGridN];
WDOUBLE LExR[nx][ZGridN], LEyR[nx][ZGridN], LEzR[nx][ZGridN];
WDOUBLE LBxR[nx][ZGridN], LByR[nx][ZGridN], LBzR[nx][ZGridN];
WDOUBLE LExI[nx][ZGridN], LEyI[nx][ZGridN], LEzI[nx][ZGridN];
WDOUBLE LBxI[nx][ZGridN], LByI[nx][ZGridN], LBzI[nx][ZGridN];
WDOUBLE nb[nx][ZGridN];
switch(savedim)
{
case 1:
if(IndexY==Idx_y)
{
fstart[0] = (Idx_x-1)*XGridN;
fcount[0] = XGridN;
fcount[1] = ZGridN;
}
j = int(YGridN*(Ypa/2.0+1-IndexY))+1;
nnn=j;
//========================================
//========= Put Fields for Output ========
for(k=0; k<ZGridN; k++)
{
for(i=1; i<=XGridN; i++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
ne[i-1][k] = 0.5*(ccc.W_Jxx + ccc.W_Jyy + ccc.W_Denn)+0.5*ccc.W_Denn*(1.0+0.5*ccc.W_Asq)/(1+ccc.W_Psi)/(1+ccc.W_Psi);
nn[i-1][k] = ccc.W_Denn;
nb[i-1][k] = ccc.B_Den;
Psi[i-1][k] = ccc.W_Psi;
WEx[i-1][k] = -ccc.W_Ex+ccc.W_By;
WEy[i-1][k] = -ccc.W_Ey-ccc.W_Bx;
WEz[i-1][k] = ccc.W_Ez;
WBx[i-1][k] = ccc.W_Bx;
WBy[i-1][k] = ccc.W_By;
WBz[i-1][k] = ccc.W_Bz;
}
}
break;
case 2:
if(IndexX==Idx_x)
{
fstart[0] = (Idx_y-1)*YGridN;;
fcount[0] = YGridN;
fcount[1] = ZGridN;
}
i = int(XGridN*(Xpa/2.0+1-IndexX))+1;
nnn=i;
//========================================
//========= Put Fields for Output ========
for(k=0; k<ZGridN; k++)
{
for(j=1; j<=YGridN; j++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
ne[j-1][k] = 0.5*(ccc.W_Jxx + ccc.W_Jyy + ccc.W_Denn)+0.5*ccc.W_Denn*(1.0+0.5*ccc.W_Asq)/(1+ccc.W_Psi)/(1+ccc.W_Psi);
nn[j-1][k] = ccc.W_Denn;
nb[j-1][k] = ccc.B_Den;
Psi[j-1][k] = ccc.W_Psi;
WEx[j-1][k] = -ccc.W_Ex+ccc.W_By;
WEy[j-1][k] = -ccc.W_Ey-ccc.W_Bx;
WEz[j-1][k] = ccc.W_Ez;
WBx[j-1][k] = ccc.W_Bx;
WBy[j-1][k] = ccc.W_By;
WBz[j-1][k] = ccc.W_Bz;
}
}
break;
}
//========================================
//========= Create nc File ===============
switch(savedim)
{
case 1:
sprintf(sFile,"Fields2d_XZ_%d.nc",nt);
break;
case 2:
sprintf(sFile,"Fields2d_YZ_%d.nc",nt);
break;
}
if((retval = ncmpi_create(MPI_COMM_WORLD, sFile, NC_CLOBBER|NC_64BIT_OFFSET, info, &ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error:" << retval << " while creating " << sFile << "." <<'\n';
return NC_ERR;
}
//========================================
//========= Define Dimension =============
if ( (retval = ncmpi_def_dim(ncid, "nz", ZGridN, &nz_id)) ) return NC_ERR;
switch(savedim)
{
case 1:
if ( (retval = ncmpi_def_dim(ncid, "nx", XGridN*Xpa, &nx_id)) ) return NC_ERR;
F_DIM[0] = nx_id;
F_DIM[1] = nz_id;
break;
case 2:
if ( (retval = ncmpi_def_dim(ncid, "ny", YGridN*Ypa, &ny_id)) ) return NC_ERR;
F_DIM[0] = ny_id;
F_DIM[1] = nz_id;
break;
}
//========================================
//========= Define Variables =============
if ( (retval = ncmpi_def_var(ncid, "n_e", NC_WDOUBLE, 2, F_DIM, &n_e_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "n_n", NC_WDOUBLE, 2, F_DIM, &n_n_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Psi", NC_WDOUBLE, 2, F_DIM, &Psi_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEx", NC_WDOUBLE, 2, F_DIM, &WEx_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEy", NC_WDOUBLE, 2, F_DIM, &WEy_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WEz", NC_WDOUBLE, 2, F_DIM, &WEz_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBx", NC_WDOUBLE, 2, F_DIM, &WBx_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBy", NC_WDOUBLE, 2, F_DIM, &WBy_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "WBz", NC_WDOUBLE, 2, F_DIM, &WBz_id)) ) return NC_ERR;
if(Nbeam){
if ( (retval = ncmpi_def_var(ncid, "n_b", NC_WDOUBLE, 2, F_DIM, &n_b_id)) ) return NC_ERR;}
//===== Laser Wake potential =======
for (NF=0; NF<NFreqs; NF++)
{
if(ifAx[NF])
{
sprintf(vname1,"AxR_%d",NF);sprintf(vname2,"AxI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &AxR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &AxI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LExR_%d",NF);sprintf(vname2,"LExI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &LExR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &LExI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LByR_%d",NF);sprintf(vname2,"LByI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &LByR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &LByI_id[NF])) ) return NC_ERR;
}
if(ifAy[NF])
{
sprintf(vname1,"AyR_%d",NF);sprintf(vname2,"AyI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &AyR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &AyI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LEyR_%d",NF);sprintf(vname2,"LEyI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &LEyR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &LEyI_id[NF])) ) return NC_ERR;
sprintf(vname1,"LBxR_%d",NF);sprintf(vname2,"LBxI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &LBxR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &LBxI_id[NF])) ) return NC_ERR;
}
sprintf(vname1,"LEzR_%d",NF);sprintf(vname2,"LEzI_%d",NF);
if ( (retval = ncmpi_def_var(ncid, vname1, NC_WDOUBLE, 2, F_DIM, &LEzR_id[NF])) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, vname2, NC_WDOUBLE, 2, F_DIM, &LEzI_id[NF])) ) return NC_ERR;
}
if ( (retval = ncmpi_enddef(ncid)) ) return NC_ERR;
//========================================
//============ Put Variables =============
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_e_id, fstart, fcount, &ne[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_n_id, fstart, fcount, &nn[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Psi_id, fstart, fcount, &Psi[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEx_id, fstart, fcount, &WEx[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEy_id, fstart, fcount, &WEy[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WEz_id, fstart, fcount, &WEz[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBx_id, fstart, fcount, &WBx[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBy_id, fstart, fcount, &WBy[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, WBz_id, fstart, fcount, &WBz[0][0])) ) return NC_ERR;
if(Nbeam){
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, n_b_id, fstart, fcount, &nb[0][0])) ) return NC_ERR;}
//===== Laser Wake potential =======
for (NF=0; NF<NFreqs; NF++)
{
switch(savedim)
{
case 1:
j = int(YGridN*(Ypa/2.0+1-IndexY))+1;
for(k=0; k<ZGridN; k++)
{
for(i=1; i<=XGridN; i++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
if(ifAx[NF])
{
AxR[i-1][k] = ccc.Acomx[NF].real();
AxI[i-1][k] = ccc.Acomx[NF].imag();
LExR[i-1][k] = ccc.L_Ex[NF].real();
LExI[i-1][k] = ccc.L_Ex[NF].imag();
LByR[i-1][k] = ccc.L_By[NF].real();
LByI[i-1][k] = ccc.L_By[NF].imag();
}
if(ifAy[NF])
{
AyR[i-1][k] = ccc.Acomy[NF].real();
AyI[i-1][k] = ccc.Acomy[NF].imag();
LEyR[i-1][k] = ccc.L_Ey[NF].real();
LEyI[i-1][k] = ccc.L_Ey[NF].imag();
LBxR[i-1][k] = ccc.L_Bx[NF].real();
LBxI[i-1][k] = ccc.L_Bx[NF].imag();
}
LEzR[i-1][k] = ccc.L_Ez[NF].real();
LEzI[i-1][k] = ccc.L_Ez[NF].imag();
}
}
break;
case 2:
i = int(XGridN*(Xpa/2.0+1-IndexX))+1;
for(k=0; k<ZGridN; k++)
{
for(j=1; j<=YGridN; j++)
{
Cell &ccc = p_Mesh()->GetCell(i,j,k);
if(ifAx[NF])
{
AxR[j-1][k] = ccc.Acomx[NF].real();
AxI[j-1][k] = ccc.Acomx[NF].imag();
LExR[j-1][k] = ccc.L_Ex[NF].real();
LExI[j-1][k] = ccc.L_Ex[NF].imag();
LByR[j-1][k] = ccc.L_By[NF].real();
LByI[j-1][k] = ccc.L_By[NF].imag();
}
if(ifAy[NF])
{
AyR[j-1][k] = ccc.Acomy[NF].real();
AyI[j-1][k] = ccc.Acomy[NF].imag();
LEyR[j-1][k] = ccc.L_Ey[NF].real();
LEyI[j-1][k] = ccc.L_Ey[NF].imag();
LBxR[j-1][k] = ccc.L_Bx[NF].real();
LBxI[j-1][k] = ccc.L_Bx[NF].imag();
}
LEzR[j-1][k] = ccc.L_Ez[NF].real();
LEzI[j-1][k] = ccc.L_Ez[NF].imag();
}
}
break;
}
if(ifAx[NF]){
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AxR_id[NF], fstart, fcount, &AxR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AxI_id[NF], fstart, fcount, &AxI[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LExR_id[NF], fstart, fcount, &LExR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LExI_id[NF], fstart, fcount, &LExI[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LByR_id[NF], fstart, fcount, &LByR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LByI_id[NF], fstart, fcount, &LByI[0][0])) ) return NC_ERR;}
if(ifAy[NF]){
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AyR_id[NF], fstart, fcount, &AyR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, AyI_id[NF], fstart, fcount, &AyI[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEyR_id[NF], fstart, fcount, &LEyR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEyI_id[NF], fstart, fcount, &LEyI[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LBxR_id[NF], fstart, fcount, &LBxR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LBxI_id[NF], fstart, fcount, &LBxI[0][0])) ) return NC_ERR;}
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEzR_id[NF], fstart, fcount, &LEzR[0][0])) ) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, LEzI_id[NF], fstart, fcount, &LEzI[0][0])) ) return NC_ERR;
}
if ( (retval = ncmpi_sync(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while syncing " << sFile << "." <<'\n';
return NC_ERR;
}
if ( (retval = ncmpi_close(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while closing " << sFile << "." <<'\n';
return NC_ERR;
}
if(part)
{
if(Nbeam) SaveP(nt);
SaveXray(nt);
}
return 0;
}
int Domain::SaveP(int nt)
{
int N_processor;
MPI_Comm_size(MPI_COMM_WORLD, &N_processor);
char sFile[128];
char pFile[128];
static const int NC_ERR = 1;
int Xpa = p_Partition()->GetXpart();
int Ypa = p_Partition()->GetYpart();
int Idx_x = p_Partition()->RankIdx_X();
int Idx_y = p_Partition()->RankIdx_Y();
int n, type, Npart, NAll, Nparts[N_processor];
//========================================
//========= Pnetcdf Variables ============
int retval, ncid;
int np_id, F_DIM[1];
int x_id, y_id, z_id, x0_id, y0_id, z0_id;
int px_id, py_id, pz_id, Ex0_id, Ey0_id, Ez0_id;
int q2m_id, wei_id, sx_id, sy_id;
int Wxw_id, Wyw_id, Wzw_id;
int Wxl_id, Wyl_id, Wzl_id;
int PP_id; //particle partition information;
int PDim_id, PSC_id, P_DIM[2]; //start and count//dim
MPI_Offset pstart[2], pcount[2];
MPI_Info info;
MPI_Info_create(&info);
MPI_Offset fstart[1], fcount[1];
int SC[1][2];
for (n=0; n<NSpecie; n++)
{
type = SpecieType[n];
Npart= Get_NSpecie(type);
WDOUBLE *x_P, *y_P, *z_P, *x0_P, *y0_P, *z0_P;
WDOUBLE *px_P, *py_P, *pz_P;
WDOUBLE *Ex0_P, *Ey0_P, *Ez0_P;
WDOUBLE *Wxw_P, *Wyw_P, *Wzw_P;
WDOUBLE *Wxl_P, *Wyl_P, *Wzl_P;
WDOUBLE *q2m_P, *Weight_P, *sx_P, *sy_P;
x_P = new WDOUBLE[Npart+1];
y_P = new WDOUBLE[Npart+1];
z_P = new WDOUBLE[Npart+1];
x0_P = new WDOUBLE[Npart+1];
y0_P = new WDOUBLE[Npart+1];
z0_P = new WDOUBLE[Npart+1];
px_P = new WDOUBLE[Npart+1];
py_P = new WDOUBLE[Npart+1];
pz_P = new WDOUBLE[Npart+1];
Ex0_P= new WDOUBLE[Npart+1];
Ey0_P= new WDOUBLE[Npart+1];
Ez0_P= new WDOUBLE[Npart+1];
Wxw_P = new WDOUBLE[Npart+1];
Wyw_P = new WDOUBLE[Npart+1];
Wzw_P = new WDOUBLE[Npart+1];
Wxl_P = new WDOUBLE[Npart+1];
Wyl_P = new WDOUBLE[Npart+1];
Wzl_P = new WDOUBLE[Npart+1];
q2m_P = new WDOUBLE[Npart+1];
Weight_P = new WDOUBLE[Npart+1];
sx_P = new WDOUBLE[Npart+1];
sy_P = new WDOUBLE[Npart+1];
Particle *p = p_Meshes -> p_Particle;
int npp=0;
while(p)
{
if(p->type==type)
{
x_P[npp] = p->x;
y_P[npp] = p->y;
z_P[npp] = p->z;
x0_P[npp] = p->x0;
y0_P[npp] = p->y0;
z0_P[npp] = p->z0;
px_P[npp] = p->px;
py_P[npp] = p->py;
pz_P[npp] = p->pz;
Ex0_P[npp]= p->Ex0;
Ey0_P[npp]= p->Ey0;
Ez0_P[npp]= p->Ez0;
Wxw_P[npp]= p->Wxw;
Wyw_P[npp]= p->Wyw;
Wzw_P[npp]= p->Wzw;
Wxl_P[npp]= p->Wxl;
Wyl_P[npp]= p->Wyl;
Wzl_P[npp]= p->Wzl;
q2m_P[npp]= p->q2m;
Weight_P[npp]=p->weight;
sx_P[npp]=p->sx;
sy_P[npp]=p->sy;
npp++;
}
p = p-> p_PrevPart;
}
MPI_Allgather(&Npart, 1, MPI_INT, &Nparts, 1, MPI_INT, MPI_COMM_WORLD);
fstart[0] = 0;
for(int i=0; i<Rank; i++) {fstart[0]+= Nparts[i];};
fcount[0] = Npart;
NAll = 0;
for(int i=0; i<N_processor; i++) {NAll += Nparts[i];};
// //save partition for the particles;
// sprintf(pFile,"PPartition_Rank_%d_sp_%d.dt",rank,n);
// FILE * dFile;
// dFile = fopen (pFile,"w");
// fprintf(dFile, "%d %d\n", fstart[0],fcount[0]);
// fclose (dFile);
sprintf(sFile,"Parts_%d_sp_%d.nc",nt,n);
if((retval = ncmpi_create(MPI_COMM_WORLD, sFile, NC_CLOBBER|NC_64BIT_OFFSET, info, &ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error:" << retval << " while creating " << sFile << "." <<'\n';
return NC_ERR;
}
//========================================
//========= Define Dimension =============
if ( (retval = ncmpi_def_dim(ncid, "np", NAll, &np_id)) ) return NC_ERR;
F_DIM[0] = np_id;
//particle partition information;
if ( (retval = ncmpi_def_dim(ncid, "npro", N_processor, &PDim_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_dim(ncid, "SC", 2, &PSC_id)) ) return NC_ERR;
P_DIM[0] = PDim_id; //Number of processors
P_DIM[1] = PSC_id; //start and count
pstart[0]=Rank;
pstart[1]=0;
pcount[0]=1;
pcount[1]=2;
SC[0][0]=fstart[0];
SC[0][1]=fcount[0];
if ( (retval = ncmpi_put_att_WDOUBLE(ncid, NC_GLOBAL, "time", NC_WDOUBLE, 1, &Time)) ) return NC_ERR;
//========================================
//========= Define Variables =============
if ( (retval = ncmpi_def_var(ncid, "partition", NC_INT, 2, P_DIM, &PP_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "x0", NC_WDOUBLE, 1, F_DIM, &x0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "y0", NC_WDOUBLE, 1, F_DIM, &y0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "z0", NC_WDOUBLE, 1, F_DIM, &z0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "xx", NC_WDOUBLE, 1, F_DIM, &x_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "yy", NC_WDOUBLE, 1, F_DIM, &y_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "zz", NC_WDOUBLE, 1, F_DIM, &z_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "px", NC_WDOUBLE, 1, F_DIM, &px_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "py", NC_WDOUBLE, 1, F_DIM, &py_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "pz", NC_WDOUBLE, 1, F_DIM, &pz_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Ex", NC_WDOUBLE, 1, F_DIM, &Ex0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Ey", NC_WDOUBLE, 1, F_DIM, &Ey0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Ez", NC_WDOUBLE, 1, F_DIM, &Ez0_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wxw", NC_WDOUBLE, 1, F_DIM, &Wxw_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wyw", NC_WDOUBLE, 1, F_DIM, &Wyw_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wzw", NC_WDOUBLE, 1, F_DIM, &Wzw_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wxl", NC_WDOUBLE, 1, F_DIM, &Wxl_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wyl", NC_WDOUBLE, 1, F_DIM, &Wyl_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "Wzl", NC_WDOUBLE, 1, F_DIM, &Wzl_id)) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "q2m", NC_WDOUBLE, 1, F_DIM, &q2m_id )) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "weight", NC_WDOUBLE, 1, F_DIM, &wei_id )) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "sx", NC_WDOUBLE, 1, F_DIM, &sx_id )) ) return NC_ERR;
if ( (retval = ncmpi_def_var(ncid, "sy", NC_WDOUBLE, 1, F_DIM, &sy_id )) ) return NC_ERR;
if ( (retval = ncmpi_enddef(ncid)) ) return NC_ERR;
//========================================
//============ Put Variables =============
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, x0_id, fstart, fcount, &x0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, y0_id, fstart, fcount, &y0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, z0_id, fstart, fcount, &z0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, x_id, fstart, fcount, &x_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, y_id, fstart, fcount, &y_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, z_id, fstart, fcount, &z_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, px_id, fstart, fcount, &px_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, py_id, fstart, fcount, &py_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, pz_id, fstart, fcount, &pz_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Ex0_id,fstart, fcount, &Ex0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Ey0_id,fstart, fcount, &Ey0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Ez0_id,fstart, fcount, &Ez0_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wxw_id,fstart, fcount, &Wxw_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wyw_id,fstart, fcount, &Wyw_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wzw_id,fstart, fcount, &Wzw_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wxl_id,fstart, fcount, &Wxl_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wyl_id,fstart, fcount, &Wyl_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, Wzl_id,fstart, fcount, &Wzl_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, q2m_id,fstart, fcount, &q2m_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, wei_id,fstart, fcount, &Weight_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, sx_id,fstart, fcount, &sx_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_WDOUBLE_all(ncid, sy_id,fstart, fcount, &sy_P[0]))) return NC_ERR;
if ( (retval = ncmpi_put_vara_int_all(ncid, PP_id, pstart, pcount, &SC[0][0]))) return NC_ERR;
if ( (retval = ncmpi_sync(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while syncing " << sFile << "." <<'\n';
return NC_ERR;
}
if ( (retval = ncmpi_close(ncid)) )
{
if(Rank==0) std::cout<< "Domain: pnetcdf error " << retval << " while closing " << sFile << "." <<'\n';
return NC_ERR;
}
delete [] x_P; delete [] y_P; delete [] z_P;
delete [] x0_P; delete [] y0_P; delete [] z0_P;
delete [] px_P; delete [] py_P; delete [] pz_P;
delete [] Ex0_P; delete [] Ey0_P; delete [] Ez0_P;
delete [] Wxw_P; delete [] Wyw_P; delete [] Wzw_P;
delete [] Wxl_P; delete [] Wyl_P; delete [] Wzl_P;
delete [] q2m_P; delete [] Weight_P;
delete [] sx_P; delete [] sy_P;
}