add basic tests for scripts

at some point this will become much more comprehensive, but for now this will avoid embarrassing mistakes

Author: tjparnell

Build.PL

@@ -40,6 +40,7 @@ sub get_base_options {
 		test_requires     => {
 			'Test::More'              => 1.302,
 			'Test::Warn'              => 0.36,
+			'Test::Script'            => 1.29,
 		},
 		meta_merge        => {
 			resources     => {

MANIFEST

@@ -71,6 +71,7 @@ t/08.BigWigSet-UCSC.t
 t/09.USeq.t
 t/10.Wiggle.t
 t/11.big_helper.t
+t/12.scripts.t
 t/Data/biotoolbox.cfg
 t/Data/chrI.gff3
 t/Data/ensemblSource.txt

t/12.scripts.t

@@ -0,0 +1,45 @@
+#!/usr/bin/perl -w
+
+# Test script for Bio::ToolBox scripts
+
+use strict;
+use English qw(-no_match_vars);
+use Test::More;
+use Test::Script;
+use File::Spec;
+use IO::File;
+use FindBin '$Bin';
+
+BEGIN {
+	plan tests => 22;
+	## no critic
+	$ENV{'BIOTOOLBOX'} = File::Spec->catfile( $Bin, 'Data', 'biotoolbox.cfg' );
+	## use critic
+}
+
+## check that all scripts compile correctly
+script_compiles( 'scripts/bam2wig.pl', 'bam2wig compiles ok' );
+script_compiles( 'scripts/correlate_position_data.pl',
+	'correlate_position_data compiles ok' );
+script_compiles( 'scripts/data2bed.pl',         'data2bed compiles ok' );
+script_compiles( 'scripts/data2fasta.pl',       'data2fasta compiles ok' );
+script_compiles( 'scripts/data2gff.pl',         'data2gff compiles ok' );
+script_compiles( 'scripts/data2wig.pl',         'data2wig compiles ok' );
+script_compiles( 'scripts/db_setup.pl',         'db_setup compiles ok' );
+script_compiles( 'scripts/db_types.pl',         'db_types compiles ok' );
+script_compiles( 'scripts/get_binned_data.pl',  'get_binned_data compiles ok' );
+script_compiles( 'scripts/get_datasets.pl',     'get_datasets compiles ok' );
+script_compiles( 'scripts/get_feature_info.pl', 'get_feature_info compiles ok' );
+script_compiles( 'scripts/get_features.pl',     'get_features compiles ok' );
+script_compiles( 'scripts/get_gene_regions.pl', 'get_gene_regions compiles ok' );
+script_compiles( 'scripts/get_intersecting_features.pl',
+	'get_intersecting_features compiles ok' );
+script_compiles( 'scripts/get_relative_data.pl',   'get_relative_data compiles ok' );
+script_compiles( 'scripts/join_data_file.pl',      'join_data_file compiles ok' );
+script_compiles( 'scripts/manipulate_datasets.pl', 'manipulate_datasets compiles ok' );
+script_compiles( 'scripts/manipulate_wig.pl',      'manipulate_wig compiles ok' );
+script_compiles( 'scripts/merge_datasets.pl',      'merge_datasets compiles ok' );
+script_compiles( 'scripts/pull_features.pl',       'pull_features compiles ok' );
+script_compiles( 'scripts/split_data_file.pl',     'split_data_file compiles ok' );
+script_compiles( 'scripts/ucsc_table2gff3.pl',     'ucsc_table2gff3 compiles ok' );
+